Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1163

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1161 and Psyr_1162 overlap by 4 nucleotidesPsyr_1162 and Psyr_1163 overlap by 1 nucleotidesPsyr_1163 and Psyr_1164 overlap by 4 nucleotides Psyr_1161: Psyr_1161 - transcriptional regulator, GntR family, at 1,315,662 to 1,316,348 _1161 Psyr_1162: Psyr_1162 - conserved hypothetical protein, at 1,316,345 to 1,316,740 _1162 Psyr_1163: Psyr_1163 - Isochorismatase hydrolase, at 1,316,740 to 1,317,417 _1163 Psyr_1164: Psyr_1164 - nucleoside ABC transporter ATP-binding protein, at 1,317,414 to 1,318,949 _1164 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1315.758 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.866 kb on - strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1316.021 kb on + strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.099 kb on - strand, within Psyr_1161at 1316.168 kb on - strand, within Psyr_1161at 1316.189 kb on - strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.686 kb on - strand, within Psyr_1162at 1316.858 kb on + strand, within Psyr_1163at 1316.858 kb on + strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1317.269 kb on - strand, within Psyr_1163at 1317.708 kb on + strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164at 1317.709 kb on - strand, within Psyr_1164at 1317.933 kb on + strand, within Psyr_1164at 1317.980 kb on - strand, within Psyr_1164at 1318.000 kb on - strand, within Psyr_1164at 1318.133 kb on + strand, within Psyr_1164at 1318.133 kb on + strand, within Psyr_1164at 1318.134 kb on - strand, within Psyr_1164at 1318.134 kb on - strand, within Psyr_1164at 1318.222 kb on - strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
1,315,758 + Psyr_1161 0.14 -0.6
1,315,816 + Psyr_1161 0.22 +3.6
1,315,816 + Psyr_1161 0.22 -1.4
1,315,816 + Psyr_1161 0.22 +2.0
1,315,816 + Psyr_1161 0.22 +3.8
1,315,816 + Psyr_1161 0.22 +1.0
1,315,816 + Psyr_1161 0.22 +2.0
1,315,817 - Psyr_1161 0.23 -3.4
1,315,817 - Psyr_1161 0.23 +1.3
1,315,817 - Psyr_1161 0.23 +0.9
1,315,817 - Psyr_1161 0.23 -2.5
1,315,820 + Psyr_1161 0.23 -1.9
1,315,820 + Psyr_1161 0.23 -0.3
1,315,820 + Psyr_1161 0.23 -3.2
1,315,820 + Psyr_1161 0.23 -1.4
1,315,820 + Psyr_1161 0.23 -0.5
1,315,820 + Psyr_1161 0.23 +2.8
1,315,820 + Psyr_1161 0.23 -1.5
1,315,820 + Psyr_1161 0.23 -0.0
1,315,820 + Psyr_1161 0.23 -0.6
1,315,820 + Psyr_1161 0.23 -0.3
1,315,820 + Psyr_1161 0.23 -1.4
1,315,820 + Psyr_1161 0.23 -3.5
1,315,820 + Psyr_1161 0.23 -0.5
1,315,820 + Psyr_1161 0.23 -0.8
1,315,821 - Psyr_1161 0.23 -1.7
1,315,821 - Psyr_1161 0.23 -1.4
1,315,821 - Psyr_1161 0.23 -2.3
1,315,821 - Psyr_1161 0.23 -1.2
1,315,821 - Psyr_1161 0.23 -0.0
1,315,821 - Psyr_1161 0.23 +3.5
1,315,821 - Psyr_1161 0.23 -0.0
1,315,821 - Psyr_1161 0.23 -0.5
1,315,821 - Psyr_1161 0.23 -1.1
1,315,821 - Psyr_1161 0.23 -0.3
1,315,821 - Psyr_1161 0.23 -2.5
1,315,821 - Psyr_1161 0.23 -0.2
1,315,821 - Psyr_1161 0.23 +2.3
1,315,821 - Psyr_1161 0.23 -5.0
1,315,821 - Psyr_1161 0.23 +2.3
1,315,866 - Psyr_1161 0.30 -0.0
1,315,973 + Psyr_1161 0.45 +3.2
1,315,973 + Psyr_1161 0.45 -1.9
1,315,973 + Psyr_1161 0.45 +1.0
1,315,973 + Psyr_1161 0.45 +2.8
1,315,973 + Psyr_1161 0.45 -1.0
1,315,974 - Psyr_1161 0.45 +2.8
1,315,974 - Psyr_1161 0.45 +0.5
1,315,974 - Psyr_1161 0.45 +0.4
1,315,974 - Psyr_1161 0.45 -1.9
1,315,974 - Psyr_1161 0.45 +2.3
1,315,974 - Psyr_1161 0.45 +2.6
1,315,977 + Psyr_1161 0.46 -0.9
1,315,977 + Psyr_1161 0.46 +1.0
1,315,977 + Psyr_1161 0.46 -2.6
1,315,977 + Psyr_1161 0.46 -1.9
1,315,977 + Psyr_1161 0.46 +2.4
1,315,977 + Psyr_1161 0.46 +3.5
1,315,977 + Psyr_1161 0.46 +1.0
1,315,977 + Psyr_1161 0.46 +3.2
1,315,977 + Psyr_1161 0.46 +4.5
1,315,977 + Psyr_1161 0.46 +4.4
1,315,977 + Psyr_1161 0.46 +0.3
1,315,977 + Psyr_1161 0.46 -1.4
1,315,977 + Psyr_1161 0.46 -0.3
1,315,977 + Psyr_1161 0.46 -1.3
1,315,977 + Psyr_1161 0.46 -1.0
1,315,977 + Psyr_1161 0.46 +3.9
1,315,978 - Psyr_1161 0.46 +1.0
1,315,978 - Psyr_1161 0.46 -1.8
1,315,978 - Psyr_1161 0.46 -5.0
1,315,978 - Psyr_1161 0.46 +2.8
1,315,978 - Psyr_1161 0.46 -0.6
1,315,978 - Psyr_1161 0.46 -2.2
1,315,978 - Psyr_1161 0.46 +2.3
1,315,978 - Psyr_1161 0.46 -0.3
1,315,978 - Psyr_1161 0.46 -1.7
1,315,978 - Psyr_1161 0.46 -2.5
1,316,021 + Psyr_1161 0.52 +2.3
1,316,022 - Psyr_1161 0.52 -0.2
1,316,022 - Psyr_1161 0.52 -1.9
1,316,098 + Psyr_1161 0.63 -1.4
1,316,098 + Psyr_1161 0.63 +4.0
1,316,098 + Psyr_1161 0.63 +0.8
1,316,099 - Psyr_1161 0.64 -2.4
1,316,099 - Psyr_1161 0.64 +3.0
1,316,168 - Psyr_1161 0.74 -1.8
1,316,189 - Psyr_1161 0.77 +3.0
1,316,272 + Psyr_1161 0.89 -0.9
1,316,272 + Psyr_1161 0.89 +0.2
1,316,272 + Psyr_1161 0.89 -0.4
1,316,272 + Psyr_1161 0.89 -1.0
1,316,273 - Psyr_1161 0.89 +3.5
1,316,273 - Psyr_1161 0.89 +3.7
1,316,640 + Psyr_1162 0.74 +0.1
1,316,640 + Psyr_1162 0.74 +2.6
1,316,640 + Psyr_1162 0.74 +4.0
1,316,641 - Psyr_1162 0.75 +3.3
1,316,641 - Psyr_1162 0.75 +3.0
1,316,641 - Psyr_1162 0.75 -2.2
1,316,641 - Psyr_1162 0.75 +2.6
1,316,686 - Psyr_1162 0.86 -0.3
1,316,858 + Psyr_1163 0.17 -2.2
1,316,858 + Psyr_1163 0.17 -1.8
1,316,859 - Psyr_1163 0.18 +1.0
1,316,859 - Psyr_1163 0.18 -1.0
1,316,859 - Psyr_1163 0.18 -0.2
1,316,859 - Psyr_1163 0.18 -2.8
1,317,269 - Psyr_1163 0.78 +0.1
1,317,708 + Psyr_1164 0.19 -0.9
1,317,709 - Psyr_1164 0.19 +3.0
1,317,709 - Psyr_1164 0.19 +4.2
1,317,933 + Psyr_1164 0.34 -1.2
1,317,980 - Psyr_1164 0.37 +2.8
1,318,000 - Psyr_1164 0.38 +1.4
1,318,133 + Psyr_1164 0.47 +3.0
1,318,133 + Psyr_1164 0.47 -1.0
1,318,134 - Psyr_1164 0.47 +2.3
1,318,134 - Psyr_1164 0.47 -0.3
1,318,222 - Psyr_1164 0.53 +4.2
1,318,330 + Psyr_1164 0.60 -2.2
1,318,330 + Psyr_1164 0.60 -0.4

Or see this region's nucleotide sequence