Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1111

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1110 and Psyr_1111 are separated by 50 nucleotidesPsyr_1111 and Psyr_1112 are separated by 16 nucleotides Psyr_1110: Psyr_1110 - glucokinase, at 1,257,902 to 1,258,867 _1110 Psyr_1111: Psyr_1111 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 1,258,918 to 1,259,655 _1111 Psyr_1112: Psyr_1112 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 1,259,672 to 1,261,123 _1112 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1257.925 kb on + strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1258.034 kb on + strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strandat 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.248 kb on - strand, within Psyr_1110at 1258.499 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.679 kb on - strand, within Psyr_1110at 1258.706 kb on - strand, within Psyr_1110at 1258.769 kb on + strand, within Psyr_1110at 1258.808 kb on + strandat 1258.879 kb on + strandat 1258.880 kb on - strandat 1258.880 kb on - strandat 1258.933 kb on - strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.987 kb on + strandat 1258.988 kb on - strandat 1258.988 kb on - strandat 1258.988 kb on - strandat 1258.988 kb on - strandat 1259.230 kb on + strand, within Psyr_1111at 1259.231 kb on - strand, within Psyr_1111at 1259.589 kb on + strandat 1259.653 kb on + strandat 1259.654 kb on - strandat 1259.654 kb on - strandat 1259.787 kb on + strandat 1259.787 kb on + strandat 1259.787 kb on + strandat 1259.787 kb on + strandat 1259.787 kb on + strandat 1259.788 kb on - strandat 1259.788 kb on - strandat 1259.788 kb on - strandat 1259.788 kb on - strandat 1259.861 kb on + strand, within Psyr_1112at 1259.910 kb on + strand, within Psyr_1112at 1259.910 kb on + strand, within Psyr_1112at 1259.918 kb on - strand, within Psyr_1112at 1260.143 kb on + strand, within Psyr_1112at 1260.218 kb on + strand, within Psyr_1112at 1260.218 kb on + strand, within Psyr_1112at 1260.218 kb on + strand, within Psyr_1112at 1260.218 kb on + strand, within Psyr_1112at 1260.219 kb on - strand, within Psyr_1112at 1260.219 kb on - strand, within Psyr_1112at 1260.219 kb on - strand, within Psyr_1112at 1260.246 kb on - strand, within Psyr_1112at 1260.246 kb on - strand, within Psyr_1112at 1260.246 kb on - strand, within Psyr_1112at 1260.270 kb on + strand, within Psyr_1112at 1260.270 kb on + strand, within Psyr_1112

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,257,925 + +3.2
1,257,926 - +3.0
1,257,926 - +0.0
1,257,926 - -0.5
1,257,926 - -1.8
1,257,927 + -0.6
1,257,927 + -1.6
1,257,927 + -0.5
1,257,927 + +3.6
1,257,928 - +0.0
1,257,928 - -1.7
1,257,928 - +3.3
1,257,928 - +0.1
1,258,034 + Psyr_1110 0.14 +3.2
1,258,035 - Psyr_1110 0.14 +0.0
1,258,035 - Psyr_1110 0.14 -3.2
1,258,035 - Psyr_1110 0.14 -0.9
1,258,035 - Psyr_1110 0.14 -1.5
1,258,035 - Psyr_1110 0.14 -1.0
1,258,035 - Psyr_1110 0.14 +0.8
1,258,077 + Psyr_1110 0.18 -1.0
1,258,077 + Psyr_1110 0.18 +4.1
1,258,077 + Psyr_1110 0.18 -0.3
1,258,077 + Psyr_1110 0.18 -1.2
1,258,077 + Psyr_1110 0.18 -1.7
1,258,077 + Psyr_1110 0.18 -1.3
1,258,077 + Psyr_1110 0.18 +0.0
1,258,077 + Psyr_1110 0.18 +3.5
1,258,077 + Psyr_1110 0.18 -1.2
1,258,077 + Psyr_1110 0.18 +1.0
1,258,077 + Psyr_1110 0.18 +0.3
1,258,077 + Psyr_1110 0.18 -0.4
1,258,077 + Psyr_1110 0.18 +0.0
1,258,077 + Psyr_1110 0.18 +0.0
1,258,077 + Psyr_1110 0.18 -1.4
1,258,077 + Psyr_1110 0.18 -1.7
1,258,077 + Psyr_1110 0.18 +3.5
1,258,077 + Psyr_1110 0.18 +3.9
1,258,077 + Psyr_1110 0.18 -0.5
1,258,077 + Psyr_1110 0.18 -1.3
1,258,077 + Psyr_1110 0.18 -1.1
1,258,077 + Psyr_1110 0.18 +2.3
1,258,077 + Psyr_1110 0.18 +0.4
1,258,077 + Psyr_1110 0.18 -1.4
1,258,078 - Psyr_1110 0.18 +4.0
1,258,078 - Psyr_1110 0.18 +0.0
1,258,078 - Psyr_1110 0.18 +0.0
1,258,078 - Psyr_1110 0.18 -0.9
1,258,078 - Psyr_1110 0.18 +3.2
1,258,078 - Psyr_1110 0.18 -1.9
1,258,078 - Psyr_1110 0.18 -0.8
1,258,078 - Psyr_1110 0.18 -1.1
1,258,078 - Psyr_1110 0.18 +1.0
1,258,078 - Psyr_1110 0.18 -2.8
1,258,078 - Psyr_1110 0.18 +0.1
1,258,078 - Psyr_1110 0.18 -0.7
1,258,078 - Psyr_1110 0.18 +3.8
1,258,078 - Psyr_1110 0.18 +0.7
1,258,078 - +1.0
1,258,078 - Psyr_1110 0.18 -1.1
1,258,078 - Psyr_1110 0.18 +3.2
1,258,078 - Psyr_1110 0.18 -1.0
1,258,078 - Psyr_1110 0.18 -1.4
1,258,078 - Psyr_1110 0.18 +1.0
1,258,078 - Psyr_1110 0.18 +1.6
1,258,078 - Psyr_1110 0.18 -3.6
1,258,078 - Psyr_1110 0.18 +1.4
1,258,078 - Psyr_1110 0.18 -1.7
1,258,078 - Psyr_1110 0.18 +0.2
1,258,078 - Psyr_1110 0.18 +0.3
1,258,248 - Psyr_1110 0.36 +2.3
1,258,499 + Psyr_1110 0.62 +3.8
1,258,676 + Psyr_1110 0.80 -0.4
1,258,676 + Psyr_1110 0.80 +2.8
1,258,676 + Psyr_1110 0.80 -0.6
1,258,677 - Psyr_1110 0.80 +1.6
1,258,677 - Psyr_1110 0.80 -0.3
1,258,677 - Psyr_1110 0.80 +2.6
1,258,677 - Psyr_1110 0.80 -0.3
1,258,677 - Psyr_1110 0.80 +2.6
1,258,677 - Psyr_1110 0.80 -1.7
1,258,677 - Psyr_1110 0.80 -0.9
1,258,677 - Psyr_1110 0.80 +3.0
1,258,679 - Psyr_1110 0.80 -1.2
1,258,706 - Psyr_1110 0.83 -0.7
1,258,769 + Psyr_1110 0.90 +3.0
1,258,808 + -0.0
1,258,879 + -0.0
1,258,880 - -0.6
1,258,880 - +0.0
1,258,933 - +1.8
1,258,987 + -0.3
1,258,987 + -1.1
1,258,987 + -2.9
1,258,987 + +2.0
1,258,987 + -2.0
1,258,987 + +4.8
1,258,987 + +3.8
1,258,987 + -1.6
1,258,987 + +0.1
1,258,988 - -0.5
1,258,988 - +3.5
1,258,988 - -3.0
1,258,988 - +2.0
1,259,230 + Psyr_1111 0.42 +0.4
1,259,231 - Psyr_1111 0.42 +2.3
1,259,589 + +4.0
1,259,653 + +3.9
1,259,654 - -0.4
1,259,654 - +1.0
1,259,787 + +3.7
1,259,787 + +3.2
1,259,787 + +0.2
1,259,787 + +2.6
1,259,787 + -0.6
1,259,788 - +3.6
1,259,788 - +3.9
1,259,788 - -0.3
1,259,788 - -0.6
1,259,861 + Psyr_1112 0.13 -0.5
1,259,910 + Psyr_1112 0.16 -1.5
1,259,910 + Psyr_1112 0.16 +0.3
1,259,918 - Psyr_1112 0.17 -1.1
1,260,143 + Psyr_1112 0.32 +2.8
1,260,218 + Psyr_1112 0.38 -1.0
1,260,218 + Psyr_1112 0.38 -0.9
1,260,218 + Psyr_1112 0.38 +2.8
1,260,218 + Psyr_1112 0.38 +3.0
1,260,219 - Psyr_1112 0.38 +2.6
1,260,219 - Psyr_1112 0.38 -0.3
1,260,219 - Psyr_1112 0.38 -0.6
1,260,246 - Psyr_1112 0.40 -0.1
1,260,246 - Psyr_1112 0.40 +0.3
1,260,246 - Psyr_1112 0.40 +4.5
1,260,270 + Psyr_1112 0.41 +1.9
1,260,270 + Psyr_1112 0.41 +2.8

Or see this region's nucleotide sequence