Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1050

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1048 and Psyr_1049 are separated by 71 nucleotidesPsyr_1049 and Psyr_1050 are separated by 15 nucleotidesPsyr_1050 and Psyr_1051 are separated by 211 nucleotides Psyr_1048: Psyr_1048 - Secretion protein HlyD, at 1,184,228 to 1,185,088 _1048 Psyr_1049: Psyr_1049 - Short-chain dehydrogenase/reductase SDR, at 1,185,160 to 1,185,978 _1049 Psyr_1050: Psyr_1050 - conserved hypothetical protein, at 1,185,994 to 1,186,458 _1050 Psyr_1051: Psyr_1051 - YD repeat protein, at 1,186,670 to 1,189,453 _1051 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1185.089 kb on + strandat 1185.089 kb on + strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.144 kb on + strandat 1185.336 kb on + strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.487 kb on + strand, within Psyr_1049at 1185.557 kb on + strand, within Psyr_1049at 1185.673 kb on + strand, within Psyr_1049at 1185.673 kb on + strand, within Psyr_1049at 1185.674 kb on - strand, within Psyr_1049at 1185.833 kb on - strand, within Psyr_1049at 1185.961 kb on - strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.142 kb on + strand, within Psyr_1050at 1186.142 kb on + strand, within Psyr_1050at 1186.142 kb on + strand, within Psyr_1050at 1186.143 kb on - strand, within Psyr_1050at 1186.181 kb on + strand, within Psyr_1050at 1186.182 kb on - strand, within Psyr_1050at 1186.227 kb on + strand, within Psyr_1050at 1186.280 kb on + strand, within Psyr_1050at 1186.281 kb on - strand, within Psyr_1050at 1186.281 kb on - strand, within Psyr_1050at 1186.439 kb on - strandat 1186.493 kb on + strandat 1186.493 kb on + strandat 1186.494 kb on - strandat 1186.494 kb on - strandat 1186.494 kb on - strandat 1186.496 kb on + strandat 1186.497 kb on - strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.579 kb on + strandat 1186.580 kb on - strandat 1186.580 kb on - strandat 1186.580 kb on - strandat 1186.580 kb on - strandat 1186.580 kb on - strandat 1186.580 kb on - strandat 1186.608 kb on + strandat 1186.609 kb on - strandat 1186.609 kb on - strandat 1186.609 kb on - strandat 1186.609 kb on - strandat 1186.612 kb on + strandat 1186.613 kb on - strandat 1186.613 kb on - strandat 1186.654 kb on + strandat 1186.654 kb on + strandat 1186.655 kb on - strandat 1186.655 kb on - strandat 1186.655 kb on - strandat 1186.655 kb on - strandat 1186.655 kb on - strandat 1186.713 kb on + strandat 1186.714 kb on - strandat 1186.714 kb on - strandat 1186.714 kb on - strandat 1186.714 kb on - strandat 1186.974 kb on + strand, within Psyr_1051at 1187.011 kb on + strand, within Psyr_1051at 1187.011 kb on + strand, within Psyr_1051at 1187.011 kb on + strand, within Psyr_1051at 1187.012 kb on - strand, within Psyr_1051at 1187.012 kb on - strand, within Psyr_1051at 1187.012 kb on - strand, within Psyr_1051at 1187.082 kb on - strand, within Psyr_1051at 1187.105 kb on + strand, within Psyr_1051at 1187.105 kb on + strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.106 kb on - strand, within Psyr_1051at 1187.107 kb on + strand, within Psyr_1051at 1187.107 kb on + strand, within Psyr_1051at 1187.108 kb on - strand, within Psyr_1051at 1187.108 kb on - strand, within Psyr_1051at 1187.188 kb on + strand, within Psyr_1051at 1187.188 kb on + strand, within Psyr_1051at 1187.303 kb on + strand, within Psyr_1051at 1187.304 kb on - strand, within Psyr_1051at 1187.304 kb on - strand, within Psyr_1051at 1187.304 kb on - strand, within Psyr_1051at 1187.304 kb on - strand, within Psyr_1051at 1187.304 kb on - strand, within Psyr_1051at 1187.366 kb on + strand, within Psyr_1051at 1187.367 kb on - strand, within Psyr_1051at 1187.367 kb on - strand, within Psyr_1051at 1187.367 kb on - strand, within Psyr_1051

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,185,089 + -1.8
1,185,089 + +2.6
1,185,090 - +2.8
1,185,090 - -1.6
1,185,090 - +0.0
1,185,090 - +3.8
1,185,090 - +2.8
1,185,090 - +0.0
1,185,144 + +0.3
1,185,336 + Psyr_1049 0.21 -1.1
1,185,337 - Psyr_1049 0.22 +4.3
1,185,337 - Psyr_1049 0.22 +3.5
1,185,337 - Psyr_1049 0.22 +1.3
1,185,337 - Psyr_1049 0.22 +3.5
1,185,487 + Psyr_1049 0.40 -0.8
1,185,557 + Psyr_1049 0.48 +0.0
1,185,673 + Psyr_1049 0.63 +4.9
1,185,673 + Psyr_1049 0.63 +3.7
1,185,674 - Psyr_1049 0.63 +0.8
1,185,833 - Psyr_1049 0.82 -4.1
1,185,961 - -0.8
1,186,015 + -2.9
1,186,015 + -1.9
1,186,015 + -1.4
1,186,015 + -1.9
1,186,015 + -0.1
1,186,015 + -3.8
1,186,015 + -1.1
1,186,015 + +0.2
1,186,016 - +1.3
1,186,016 - -0.1
1,186,016 - +2.8
1,186,016 - +3.4
1,186,016 - +3.2
1,186,016 - -1.1
1,186,016 - -0.4
1,186,016 - +0.6
1,186,016 - +1.6
1,186,142 + Psyr_1050 0.32 -1.0
1,186,142 + Psyr_1050 0.32 -2.1
1,186,142 + Psyr_1050 0.32 +1.0
1,186,143 - Psyr_1050 0.32 -1.6
1,186,181 + Psyr_1050 0.40 -2.2
1,186,182 - Psyr_1050 0.40 +3.6
1,186,227 + Psyr_1050 0.50 -0.7
1,186,280 + Psyr_1050 0.62 -2.0
1,186,281 - Psyr_1050 0.62 -1.4
1,186,281 - Psyr_1050 0.62 -1.1
1,186,439 - -0.9
1,186,493 + -1.5
1,186,493 + -0.6
1,186,494 - +2.8
1,186,494 - +1.6
1,186,494 - -1.4
1,186,496 + +0.1
1,186,497 - -1.8
1,186,579 + +5.0
1,186,579 + -0.2
1,186,579 + +2.6
1,186,579 + -1.3
1,186,579 + -0.4
1,186,579 + +1.0
1,186,579 + -1.6
1,186,579 + -0.8
1,186,579 + +0.1
1,186,580 - +2.6
1,186,580 - +2.4
1,186,580 - +0.0
1,186,580 - +3.6
1,186,580 - +1.8
1,186,580 - -0.5
1,186,608 + +0.3
1,186,609 - -0.9
1,186,609 - +1.8
1,186,609 - +0.0
1,186,609 - +0.9
1,186,612 + +3.0
1,186,613 - +2.4
1,186,613 - -1.1
1,186,654 + +2.8
1,186,654 + -0.8
1,186,655 - +2.6
1,186,655 - +4.1
1,186,655 - -0.9
1,186,655 - +4.0
1,186,655 - +2.4
1,186,713 + +2.0
1,186,714 - +2.4
1,186,714 - +1.3
1,186,714 - -2.0
1,186,714 - -2.4
1,186,974 + Psyr_1051 0.11 +4.2
1,187,011 + Psyr_1051 0.12 +2.0
1,187,011 + Psyr_1051 0.12 -0.2
1,187,011 + Psyr_1051 0.12 -1.9
1,187,012 - Psyr_1051 0.12 -1.2
1,187,012 - Psyr_1051 0.12 +1.0
1,187,012 - Psyr_1051 0.12 -0.6
1,187,082 - Psyr_1051 0.15 -1.0
1,187,105 + Psyr_1051 0.16 +1.0
1,187,105 + Psyr_1051 0.16 +0.0
1,187,106 - Psyr_1051 0.16 -1.1
1,187,106 - Psyr_1051 0.16 -1.8
1,187,106 - Psyr_1051 0.16 -0.2
1,187,106 - Psyr_1051 0.16 +3.5
1,187,106 - Psyr_1051 0.16 -0.5
1,187,106 - Psyr_1051 0.16 +0.4
1,187,107 + Psyr_1051 0.16 +2.8
1,187,107 + Psyr_1051 0.16 +0.0
1,187,108 - Psyr_1051 0.16 +3.5
1,187,108 - Psyr_1051 0.16 -1.1
1,187,188 + Psyr_1051 0.19 +1.0
1,187,188 + Psyr_1051 0.19 -1.4
1,187,303 + Psyr_1051 0.23 +3.5
1,187,304 - Psyr_1051 0.23 -0.7
1,187,304 - Psyr_1051 0.23 +1.0
1,187,304 - Psyr_1051 0.23 -1.3
1,187,304 - Psyr_1051 0.23 +3.5
1,187,304 - Psyr_1051 0.23 -0.9
1,187,366 + Psyr_1051 0.25 +4.2
1,187,367 - Psyr_1051 0.25 +2.0
1,187,367 - Psyr_1051 0.25 -1.1
1,187,367 - Psyr_1051 0.25 -1.0

Or see this region's nucleotide sequence