Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1011

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,144,315	+				+3.6
1,144,316	-				-0.4
1,144,402	+				-0.1
1,144,403	-				-2.2
1,144,403	-				-0.5
1,144,589	+		Psyr_1010	0.31	-2.8
1,144,589	+		Psyr_1010	0.31	+0.5
1,144,589	+		Psyr_1010	0.31	-2.3
1,144,611	+		Psyr_1010	0.36	+2.4
1,144,612	-		Psyr_1010	0.36	-1.5
1,144,612	-		Psyr_1010	0.36	-0.6
1,144,612	-		Psyr_1010	0.36	-0.2
1,144,692	-		Psyr_1010	0.52	-1.6
1,144,692	-		Psyr_1010	0.52	+1.2
1,144,705	+		Psyr_1010	0.55	-2.0
1,144,796	-		Psyr_1010	0.74	-1.4
1,144,796	-		Psyr_1010	0.74	-0.1
1,144,842	+		Psyr_1010	0.83	-1.5
1,144,843	-		Psyr_1010	0.83	-1.0
1,144,843	-		Psyr_1010	0.83	-0.5
1,144,843	-		Psyr_1010	0.83	+0.5
1,144,867	+		Psyr_1010	0.88	+3.6
1,144,868	-		Psyr_1010	0.88	+3.4
1,144,939	+				+0.9
1,144,946	+				+3.2
1,144,946	+				-0.7
1,144,946	+				-1.8
1,144,947	-				-0.4
1,144,947	-				+0.5
1,144,947	-				+0.6
1,145,006	+				+3.4
1,145,007	-				-2.2
1,145,009	+				+4.4
1,145,010	-				-0.6
1,145,258	+		Psyr_1011	0.16	+2.4
1,145,259	-		Psyr_1011	0.16	+3.5
1,145,643	-		Psyr_1011	0.51	+3.5
1,145,772	+		Psyr_1011	0.62	+0.7
1,145,772	+		Psyr_1011	0.62	-1.0
1,145,773	-		Psyr_1011	0.63	+3.9
1,145,847	-		Psyr_1011	0.69	-0.4
1,145,948	+		Psyr_1011	0.78	-0.7
1,145,948	+		Psyr_1011	0.78	-1.0
1,145,949	-		Psyr_1011	0.79	+1.0
1,145,949	-		Psyr_1011	0.79	+1.0
1,146,429	+		Psyr_1012	0.23	-1.5
1,146,456	-		Psyr_1012	0.25	+3.6
1,146,538	-		Psyr_1012	0.31	+4.1
1,146,551	+		Psyr_1012	0.33	-1.5
1,146,551	+		Psyr_1012	0.33	+0.4
1,146,663	+		Psyr_1012	0.42	+0.9
1,146,664	-		Psyr_1012	0.42	+1.6
1,146,944	+		Psyr_1012	0.65	+1.6
1,146,945	-		Psyr_1012	0.65	+0.5
1,146,945	-		Psyr_1012	0.65	-0.9
1,146,980	+		Psyr_1012	0.68	+0.6
1,146,980	+		Psyr_1012	0.68	-0.8
1,146,990	+		Psyr_1012	0.68	+2.4
1,146,990	+		Psyr_1012	0.68	+2.8
1,146,990	+		Psyr_1012	0.68	-3.2
1,146,990	+		Psyr_1012	0.68	-2.4
1,146,991	-		Psyr_1012	0.69	-0.7
1,146,991	-		Psyr_1012	0.69	-0.3
1,146,991	-		Psyr_1012	0.69	-0.7
1,146,991	-		Psyr_1012	0.69	-1.2
1,146,991	-		Psyr_1012	0.69	+1.6
1,146,993	-		Psyr_1012	0.69	+2.8
1,146,993	-		Psyr_1012	0.69	-0.8
1,146,993	-		Psyr_1012	0.69	+3.2
1,147,091	+		Psyr_1012	0.77	+3.9
1,147,091	+		Psyr_1012	0.77	+0.3
1,147,091	+		Psyr_1012	0.77	-0.6
1,147,092	-		Psyr_1012	0.77	+3.9
1,147,092	-		Psyr_1012	0.77	-1.8
1,147,092	-		Psyr_1012	0.77	-0.4
1,147,092	-		Psyr_1012	0.77	+2.0
1,147,092	-		Psyr_1012	0.77	-1.7
1,147,092	-		Psyr_1012	0.77	+1.6
1,147,092	-		Psyr_1012	0.77	-1.6
1,147,092	-		Psyr_1012	0.77	-1.6