Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1007

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,140,828	+		Psyr_1006	0.51	+3.9
1,140,829	-		Psyr_1006	0.52	+3.0
1,140,829	-		Psyr_1006	0.52	-1.4
1,140,829	-		Psyr_1006	0.52	-0.5
1,140,937	+		Psyr_1006	0.63	+4.4
1,140,937	+		Psyr_1006	0.63	+1.0
1,140,937	+		Psyr_1006	0.63	-1.0
1,140,938	-		Psyr_1006	0.64	+3.0
1,140,938	-		Psyr_1006	0.64	+0.6
1,140,954	+		Psyr_1006	0.65	-1.1
1,140,954	+		Psyr_1006	0.65	-3.4
1,140,954	+		Psyr_1006	0.65	+3.9
1,140,955	-		Psyr_1006	0.65	+4.8
1,140,955	-		Psyr_1006	0.65	+1.6
1,140,955	-		Psyr_1006	0.65	-0.6
1,141,005	+		Psyr_1006	0.71	+1.5
1,141,005	+		Psyr_1006	0.71	+3.0
1,141,005	+		Psyr_1006	0.71	-1.9
1,141,006	-		Psyr_1006	0.71	-1.9
1,141,330	-				+2.6
1,141,330	-				+2.6
1,141,352	+				+0.4
1,141,353	-				-1.0
1,141,375	-				+2.8
1,141,375	-				+1.3
1,141,375	-				-2.3
1,141,375	-				+1.0
1,141,485	+				+2.6
1,141,485	+				+4.0
1,141,485	+				+2.6
1,141,485	+				-0.6
1,141,485	+				-0.9
1,141,485	+				+2.4
1,141,485	+				-3.0
1,141,485	+				+0.3
1,141,485	+				+1.4
1,141,485	+				-0.2
1,141,485	+				-1.1
1,141,485	+				+3.7
1,141,485	+				-2.3
1,141,486	-				-1.4
1,141,486	-				-2.5
1,141,486	-				+1.0
1,141,486	-				-1.9
1,141,486	-				-1.3
1,141,486	-				-0.6
1,141,493	-				+1.6
1,141,596	+		Psyr_1007	0.13	-2.4
1,141,597	-		Psyr_1007	0.13	-2.0
1,141,597	-		Psyr_1007	0.13	-1.8
1,141,619	+		Psyr_1007	0.14	-2.2
1,141,620	-		Psyr_1007	0.14	-3.9
1,141,620	-		Psyr_1007	0.14	+1.6
1,141,620	-		Psyr_1007	0.14	+2.4
1,141,620	-		Psyr_1007	0.14	-1.3
1,141,704	+		Psyr_1007	0.18	+2.0
1,141,705	-		Psyr_1007	0.18	+2.0
1,141,821	+		Psyr_1007	0.23	+2.8
1,141,822	-		Psyr_1007	0.23	+3.5
1,141,822	-		Psyr_1007	0.23	+0.0
1,141,822	-		Psyr_1007	0.23	+2.6
1,142,074	-		Psyr_1007	0.36	-1.7
1,142,074	-		Psyr_1007	0.36	+2.8
1,142,074	-		Psyr_1007	0.36	+2.0
1,142,463	+		Psyr_1007	0.54	+4.9
1,142,463	+		Psyr_1007	0.54	-2.1
1,142,463	+		Psyr_1007	0.54	+0.3
1,142,464	-		Psyr_1007	0.54	+3.2
1,142,579	+		Psyr_1007	0.60	+1.1
1,142,727	+		Psyr_1007	0.67	+0.7
1,142,728	-		Psyr_1007	0.67	-0.9
1,142,728	-		Psyr_1007	0.67	-1.3
1,142,728	-		Psyr_1007	0.67	-1.0
1,142,728	-		Psyr_1007	0.67	-1.7
1,143,075	+		Psyr_1007	0.83	-1.2
1,143,075	+		Psyr_1007	0.83	+0.2
1,143,076	-		Psyr_1007	0.83	-0.2
1,143,076	-		Psyr_1007	0.83	+3.7
1,143,076	-		Psyr_1007	0.83	-0.3
1,143,076	-		Psyr_1007	0.83	+3.2
1,143,076	-		Psyr_1007	0.83	-0.5
1,143,323	+				+2.4
1,143,323	+				+0.0
1,143,461	+				+0.6
1,143,461	+				+1.0
1,143,461	+				+1.6
1,143,462	-				+0.0
1,143,462	-				-1.9
1,143,462	-				+3.2
1,143,462	-				-0.8
1,143,462	-				-0.9
1,143,462	-				-0.3
1,143,462	-				+1.0
1,143,525	+		Psyr_1008	0.11	-0.7
1,143,525	+		Psyr_1008	0.11	+0.2
1,143,667	+		Psyr_1008	0.74	+4.2
1,143,775	+				+2.0
1,143,799	-				-1.6
1,143,799	-				-1.1
1,143,855	+				+1.0
1,143,855	+				+1.5
1,143,855	+				-0.3
1,143,855	+				+5.0
1,143,856	-				+4.0
1,143,856	-				+0.0
1,143,856	-				-1.2
1,143,856	-				-1.0
1,143,856	-				-0.8
1,143,856	-				+3.4
1,143,858	-				-1.3
1,143,919	-		Psyr_1009	0.21	-0.7
1,143,979	+		Psyr_1009	0.33	-2.0
1,143,979	+		Psyr_1009	0.33	+3.4
1,144,029	+		Psyr_1009	0.43	+4.8
1,144,315	+				+3.6
1,144,316	-				-0.4
1,144,402	+				-0.1
1,144,403	-				-2.2
1,144,403	-				-0.5