Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1005

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,138,505	-		Psyr_1004	0.11	-0.5
1,138,817	-		Psyr_1004	0.44	+1.6
1,138,839	+		Psyr_1004	0.47	+1.0
1,138,839	+		Psyr_1004	0.47	+4.0
1,138,840	-		Psyr_1004	0.47	+3.2
1,138,950	-		Psyr_1004	0.59	-1.0
1,138,950	-		Psyr_1004	0.59	-1.4
1,139,205	+		Psyr_1004	0.86	+3.0
1,139,206	-		Psyr_1004	0.86	-0.4
1,139,310	+				-1.3
1,139,311	-				+4.1
1,139,516	-		Psyr_1005	0.11	-2.5
1,139,551	-		Psyr_1005	0.16	-1.7
1,139,570	-		Psyr_1005	0.19	-0.3
1,139,570	-		Psyr_1005	0.19	-1.4
1,139,570	-		Psyr_1005	0.19	-0.5
1,139,690	-		Psyr_1005	0.36	-1.4
1,139,690	-		Psyr_1005	0.36	-1.0
1,139,690	-		Psyr_1005	0.36	-1.0
1,139,692	+		Psyr_1005	0.37	+4.0
1,139,692	+		Psyr_1005	0.37	+0.2
1,139,693	-		Psyr_1005	0.37	-0.8
1,139,693	-		Psyr_1005	0.37	+2.0
1,139,750	+		Psyr_1005	0.45	+0.5
1,139,751	-		Psyr_1005	0.45	-0.2
1,139,751	-		Psyr_1005	0.45	+3.0
1,139,751	-		Psyr_1005	0.45	-3.0
1,139,836	+		Psyr_1005	0.57	+4.4
1,139,836	+		Psyr_1005	0.57	+2.6
1,139,837	-		Psyr_1005	0.58	+2.0
1,139,837	-		Psyr_1005	0.58	-1.5
1,139,977	+		Psyr_1005	0.78	+0.8
1,139,977	+		Psyr_1005	0.78	-0.3
1,139,978	-		Psyr_1005	0.78	-1.5
1,139,978	-		Psyr_1005	0.78	-1.2
1,140,124	+				+0.2
1,140,167	+				+0.7
1,140,178	+				-1.5
1,140,178	+				+4.1
1,140,179	-				+4.8
1,140,179	-				-1.2
1,140,179	-				-1.4
1,140,179	-				+1.3
1,140,828	+		Psyr_1006	0.51	+3.9
1,140,829	-		Psyr_1006	0.52	+3.0
1,140,829	-		Psyr_1006	0.52	-1.4
1,140,829	-		Psyr_1006	0.52	-0.5
1,140,937	+		Psyr_1006	0.63	+4.4
1,140,937	+		Psyr_1006	0.63	+1.0
1,140,937	+		Psyr_1006	0.63	-1.0
1,140,938	-		Psyr_1006	0.64	+3.0
1,140,938	-		Psyr_1006	0.64	+0.6
1,140,954	+		Psyr_1006	0.65	-1.1
1,140,954	+		Psyr_1006	0.65	-3.4
1,140,954	+		Psyr_1006	0.65	+3.9
1,140,955	-		Psyr_1006	0.65	+4.8
1,140,955	-		Psyr_1006	0.65	+1.6
1,140,955	-		Psyr_1006	0.65	-0.6
1,141,005	+		Psyr_1006	0.71	+1.5
1,141,005	+		Psyr_1006	0.71	+3.0
1,141,005	+		Psyr_1006	0.71	-1.9
1,141,006	-		Psyr_1006	0.71	-1.9