Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0957

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0956 and Psyr_0957 overlap by 14 nucleotidesPsyr_0957 and Psyr_0958 overlap by 4 nucleotides Psyr_0956: Psyr_0956 - Cyclopropane-fatty-acyl-phospholipid synthase, at 1,090,142 to 1,091,410 _0956 Psyr_0957: Psyr_0957 - Protein of unknown function DUF1365, at 1,091,397 to 1,092,197 _0957 Psyr_0958: Psyr_0958 - amine oxidase, flavin-containing, at 1,092,194 to 1,093,441 _0958 Position (kb) 1091 1092 1093Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1090.461 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.639 kb on - strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1091.017 kb on + strand, within Psyr_0956at 1091.017 kb on + strand, within Psyr_0956at 1091.018 kb on - strand, within Psyr_0956at 1091.393 kb on - strandat 1091.393 kb on - strandat 1091.393 kb on - strandat 1091.481 kb on + strand, within Psyr_0957at 1091.482 kb on - strand, within Psyr_0957at 1091.515 kb on + strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.564 kb on - strand, within Psyr_0957at 1091.564 kb on - strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.811 kb on - strand, within Psyr_0957at 1092.016 kb on + strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.081 kb on + strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.082 kb on - strand, within Psyr_0957at 1092.109 kb on + strand, within Psyr_0957at 1092.127 kb on + strandat 1092.128 kb on - strandat 1092.181 kb on + strandat 1092.282 kb on + strandat 1092.282 kb on + strandat 1092.283 kb on - strandat 1092.348 kb on + strand, within Psyr_0958at 1092.349 kb on - strand, within Psyr_0958at 1092.363 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.510 kb on + strand, within Psyr_0958at 1092.589 kb on - strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.153 kb on + strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.154 kb on - strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.181 kb on + strand, within Psyr_0958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,090,461 + Psyr_0956 0.25 +4.0
1,090,578 + Psyr_0956 0.34 +1.6
1,090,578 + Psyr_0956 0.34 +0.1
1,090,578 + Psyr_0956 0.34 -2.7
1,090,578 + Psyr_0956 0.34 -4.1
1,090,578 + Psyr_0956 0.34 +2.4
1,090,579 - Psyr_0956 0.34 +3.1
1,090,579 - Psyr_0956 0.34 +3.4
1,090,579 - Psyr_0956 0.34 +2.9
1,090,579 - Psyr_0956 0.34 +1.1
1,090,639 - Psyr_0956 0.39 -0.4
1,090,785 + Psyr_0956 0.51 -1.0
1,090,785 + Psyr_0956 0.51 +4.0
1,090,785 + Psyr_0956 0.51 +1.1
1,090,789 + Psyr_0956 0.51 -0.7
1,090,789 + Psyr_0956 0.51 -0.6
1,090,789 + Psyr_0956 0.51 +4.0
1,090,929 + Psyr_0956 0.62 -1.9
1,090,929 + Psyr_0956 0.62 -0.0
1,090,929 + Psyr_0956 0.62 +2.6
1,090,929 + Psyr_0956 0.62 +1.1
1,090,930 - Psyr_0956 0.62 +1.6
1,090,930 - Psyr_0956 0.62 -2.6
1,090,930 - Psyr_0956 0.62 -0.3
1,090,930 - Psyr_0956 0.62 -2.1
1,090,930 - Psyr_0956 0.62 -4.5
1,090,930 - Psyr_0956 0.62 +0.5
1,090,930 - Psyr_0956 0.62 -1.8
1,090,930 - Psyr_0956 0.62 -0.9
1,090,930 - Psyr_0956 0.62 +3.2
1,090,930 - Psyr_0956 0.62 -2.8
1,090,930 - Psyr_0956 0.62 -1.7
1,090,930 - Psyr_0956 0.62 -4.5
1,090,981 - Psyr_0956 0.66 -4.5
1,091,017 + Psyr_0956 0.69 -4.3
1,091,017 + Psyr_0956 0.69 -1.2
1,091,018 - Psyr_0956 0.69 +2.6
1,091,393 - +0.5
1,091,393 - +0.1
1,091,393 - -3.0
1,091,481 + Psyr_0957 0.10 -1.5
1,091,482 - Psyr_0957 0.11 +0.1
1,091,515 + Psyr_0957 0.15 -2.9
1,091,516 - Psyr_0957 0.15 -1.5
1,091,564 - Psyr_0957 0.21 -1.0
1,091,564 - Psyr_0957 0.21 +3.0
1,091,655 + Psyr_0957 0.32 +3.8
1,091,655 + Psyr_0957 0.32 +0.1
1,091,655 + Psyr_0957 0.32 -0.8
1,091,655 + Psyr_0957 0.32 +2.1
1,091,655 + Psyr_0957 0.32 +3.2
1,091,655 + Psyr_0957 0.32 -0.7
1,091,656 - Psyr_0957 0.32 +1.1
1,091,656 - Psyr_0957 0.32 -1.6
1,091,656 - Psyr_0957 0.32 +0.1
1,091,785 + Psyr_0957 0.48 +1.1
1,091,785 + Psyr_0957 0.48 +3.5
1,091,785 + Psyr_0957 0.48 +0.1
1,091,785 + Psyr_0957 0.48 -1.5
1,091,785 + Psyr_0957 0.48 +1.1
1,091,785 + Psyr_0957 0.48 +4.4
1,091,785 + Psyr_0957 0.48 -1.4
1,091,785 + Psyr_0957 0.48 -0.4
1,091,785 + Psyr_0957 0.48 -0.0
1,091,785 + Psyr_0957 0.48 +2.9
1,091,785 + Psyr_0957 0.48 -0.6
1,091,785 + Psyr_0957 0.48 +2.4
1,091,785 + Psyr_0957 0.48 +2.9
1,091,785 + Psyr_0957 0.48 -1.8
1,091,785 + Psyr_0957 0.48 +0.1
1,091,785 + Psyr_0957 0.48 -1.8
1,091,785 + Psyr_0957 0.48 +3.2
1,091,785 + Psyr_0957 0.48 +1.1
1,091,786 - Psyr_0957 0.49 -0.9
1,091,786 - Psyr_0957 0.49 +4.2
1,091,786 - Psyr_0957 0.49 -3.2
1,091,786 - Psyr_0957 0.49 -1.0
1,091,786 - Psyr_0957 0.49 +2.4
1,091,786 - Psyr_0957 0.49 +0.9
1,091,786 - Psyr_0957 0.49 +2.2
1,091,786 - Psyr_0957 0.49 +3.5
1,091,786 - Psyr_0957 0.49 +3.4
1,091,786 - Psyr_0957 0.49 +3.8
1,091,786 - Psyr_0957 0.49 +2.1
1,091,786 - Psyr_0957 0.49 +3.2
1,091,786 - Psyr_0957 0.49 +4.3
1,091,786 - Psyr_0957 0.49 -0.2
1,091,811 - Psyr_0957 0.52 -0.2
1,092,016 + Psyr_0957 0.77 +0.1
1,092,017 - Psyr_0957 0.77 +3.1
1,092,017 - Psyr_0957 0.77 -0.7
1,092,081 + Psyr_0957 0.85 -0.9
1,092,082 - Psyr_0957 0.86 -0.3
1,092,082 - Psyr_0957 0.86 +0.1
1,092,082 - Psyr_0957 0.86 +1.1
1,092,109 + Psyr_0957 0.89 -1.8
1,092,127 + -3.8
1,092,128 - +3.1
1,092,181 + +2.1
1,092,282 + -1.2
1,092,282 + -0.8
1,092,283 - +2.6
1,092,348 + Psyr_0958 0.12 +0.4
1,092,349 - Psyr_0958 0.12 +2.6
1,092,363 + Psyr_0958 0.14 +3.1
1,092,468 + Psyr_0958 0.22 +0.1
1,092,468 + Psyr_0958 0.22 -0.6
1,092,468 + Psyr_0958 0.22 -0.0
1,092,468 + Psyr_0958 0.22 +0.2
1,092,468 + Psyr_0958 0.22 +2.1
1,092,468 + Psyr_0958 0.22 +0.1
1,092,469 - Psyr_0958 0.22 +0.1
1,092,469 - Psyr_0958 0.22 +2.9
1,092,469 - Psyr_0958 0.22 +0.1
1,092,469 - Psyr_0958 0.22 -0.7
1,092,469 - Psyr_0958 0.22 +2.6
1,092,469 - Psyr_0958 0.22 +3.6
1,092,469 - Psyr_0958 0.22 -1.7
1,092,469 - Psyr_0958 0.22 +1.1
1,092,469 - Psyr_0958 0.22 -0.5
1,092,510 + Psyr_0958 0.25 +3.4
1,092,589 - Psyr_0958 0.32 -0.6
1,092,801 + Psyr_0958 0.49 +2.1
1,092,801 + Psyr_0958 0.49 +2.6
1,092,801 + Psyr_0958 0.49 -1.9
1,092,801 + Psyr_0958 0.49 +1.3
1,092,801 + Psyr_0958 0.49 +3.2
1,092,802 - Psyr_0958 0.49 +4.3
1,092,957 + Psyr_0958 0.61 +2.6
1,092,957 + Psyr_0958 0.61 -1.5
1,092,957 + Psyr_0958 0.61 +2.1
1,092,957 + Psyr_0958 0.61 -1.7
1,092,957 + Psyr_0958 0.61 -1.5
1,092,957 + Psyr_0958 0.61 +4.1
1,092,957 + Psyr_0958 0.61 -0.1
1,092,957 + Psyr_0958 0.61 +1.6
1,092,957 + Psyr_0958 0.61 +2.9
1,092,957 + Psyr_0958 0.61 -2.7
1,092,958 - Psyr_0958 0.61 -1.5
1,092,958 - Psyr_0958 0.61 +2.1
1,092,958 - Psyr_0958 0.61 +3.4
1,092,958 - Psyr_0958 0.61 +2.1
1,092,958 - Psyr_0958 0.61 -0.2
1,092,958 - Psyr_0958 0.61 -5.2
1,092,958 - Psyr_0958 0.61 -1.6
1,093,153 + Psyr_0958 0.77 +1.1
1,093,153 + Psyr_0958 0.77 +3.5
1,093,154 - Psyr_0958 0.77 +2.9
1,093,154 - Psyr_0958 0.77 -2.7
1,093,155 + Psyr_0958 0.77 +2.1
1,093,155 + Psyr_0958 0.77 +0.6
1,093,155 + Psyr_0958 0.77 +3.4
1,093,155 + Psyr_0958 0.77 -1.8
1,093,155 + Psyr_0958 0.77 +3.5
1,093,156 - Psyr_0958 0.77 -0.7
1,093,156 - Psyr_0958 0.77 -0.2
1,093,181 + Psyr_0958 0.79 +2.1

Or see this region's nucleotide sequence