Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0927

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0926 and Psyr_0927 are separated by 163 nucleotidesPsyr_0927 and Psyr_0928 are separated by 42 nucleotides Psyr_0926: Psyr_0926 - dTDP-glucose 4,6-dehydratase, at 1,053,455 to 1,054,555 _0926 Psyr_0927: Psyr_0927 - hypothetical protein, at 1,054,719 to 1,055,612 _0927 Psyr_0928: Psyr_0928 - hypothetical protein, at 1,055,655 to 1,057,292 _0928 Position (kb) 1054 1055 1056Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.816 kb on + strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.817 kb on - strand, within Psyr_0926at 1053.857 kb on - strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.879 kb on + strand, within Psyr_0926at 1053.880 kb on - strand, within Psyr_0926at 1053.880 kb on - strand, within Psyr_0926at 1053.880 kb on - strand, within Psyr_0926at 1053.880 kb on - strand, within Psyr_0926at 1053.912 kb on + strand, within Psyr_0926at 1053.913 kb on - strand, within Psyr_0926at 1053.991 kb on - strand, within Psyr_0926at 1053.991 kb on - strand, within Psyr_0926at 1053.991 kb on - strand, within Psyr_0926at 1054.029 kb on + strand, within Psyr_0926at 1054.029 kb on + strand, within Psyr_0926at 1054.029 kb on + strand, within Psyr_0926at 1054.030 kb on - strand, within Psyr_0926at 1054.030 kb on - strand, within Psyr_0926at 1054.030 kb on - strand, within Psyr_0926at 1054.042 kb on - strand, within Psyr_0926at 1054.149 kb on + strand, within Psyr_0926at 1054.150 kb on - strand, within Psyr_0926at 1054.250 kb on - strand, within Psyr_0926at 1054.452 kb on + strandat 1054.452 kb on + strandat 1054.453 kb on - strandat 1054.453 kb on - strandat 1054.555 kb on + strandat 1054.555 kb on + strandat 1054.556 kb on - strandat 1054.556 kb on - strandat 1054.556 kb on - strandat 1054.560 kb on + strandat 1054.560 kb on + strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.561 kb on - strandat 1054.573 kb on - strandat 1054.586 kb on - strandat 1054.592 kb on + strandat 1054.593 kb on - strandat 1054.597 kb on - strandat 1054.597 kb on - strandat 1054.618 kb on - strandat 1054.668 kb on - strandat 1054.668 kb on - strandat 1055.049 kb on + strand, within Psyr_0927at 1055.061 kb on - strand, within Psyr_0927at 1055.135 kb on + strand, within Psyr_0927at 1055.245 kb on - strand, within Psyr_0927at 1055.375 kb on + strand, within Psyr_0927at 1055.376 kb on - strand, within Psyr_0927at 1055.376 kb on - strand, within Psyr_0927at 1055.416 kb on - strand, within Psyr_0927at 1055.560 kb on - strandat 1055.563 kb on + strandat 1055.657 kb on - strandat 1055.852 kb on - strand, within Psyr_0928at 1055.852 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1055.982 kb on - strand, within Psyr_0928at 1056.035 kb on + strand, within Psyr_0928at 1056.051 kb on + strand, within Psyr_0928at 1056.086 kb on - strand, within Psyr_0928at 1056.086 kb on - strand, within Psyr_0928at 1056.088 kb on + strand, within Psyr_0928at 1056.089 kb on - strand, within Psyr_0928at 1056.090 kb on + strand, within Psyr_0928at 1056.091 kb on - strand, within Psyr_0928at 1056.091 kb on - strand, within Psyr_0928at 1056.135 kb on + strand, within Psyr_0928at 1056.152 kb on - strand, within Psyr_0928at 1056.288 kb on - strand, within Psyr_0928at 1056.325 kb on + strand, within Psyr_0928at 1056.367 kb on + strand, within Psyr_0928at 1056.368 kb on - strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.375 kb on + strand, within Psyr_0928at 1056.424 kb on + strand, within Psyr_0928at 1056.434 kb on - strand, within Psyr_0928at 1056.449 kb on + strand, within Psyr_0928at 1056.453 kb on + strand, within Psyr_0928at 1056.453 kb on + strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.454 kb on - strand, within Psyr_0928at 1056.533 kb on + strand, within Psyr_0928at 1056.574 kb on + strand, within Psyr_0928at 1056.575 kb on - strand, within Psyr_0928at 1056.575 kb on - strand, within Psyr_0928

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,053,816 + Psyr_0926 0.33 +4.1
1,053,816 + Psyr_0926 0.33 -1.3
1,053,816 + Psyr_0926 0.33 +2.7
1,053,816 + Psyr_0926 0.33 +4.1
1,053,816 + Psyr_0926 0.33 -2.7
1,053,816 + Psyr_0926 0.33 -0.6
1,053,816 + Psyr_0926 0.33 -2.0
1,053,817 - Psyr_0926 0.33 +4.0
1,053,817 - Psyr_0926 0.33 +0.2
1,053,817 - Psyr_0926 0.33 +2.1
1,053,817 - Psyr_0926 0.33 -1.6
1,053,817 - Psyr_0926 0.33 +1.2
1,053,817 - Psyr_0926 0.33 +1.7
1,053,817 - Psyr_0926 0.33 +2.4
1,053,817 - Psyr_0926 0.33 -2.3
1,053,817 - Psyr_0926 0.33 -0.3
1,053,817 - Psyr_0926 0.33 +2.1
1,053,817 - Psyr_0926 0.33 -1.5
1,053,817 - Psyr_0926 0.33 +0.1
1,053,817 - Psyr_0926 0.33 +2.7
1,053,857 - Psyr_0926 0.37 +2.7
1,053,879 + Psyr_0926 0.39 +0.4
1,053,879 + Psyr_0926 0.39 +1.1
1,053,879 + Psyr_0926 0.39 -1.6
1,053,879 + Psyr_0926 0.39 +1.7
1,053,879 + Psyr_0926 0.39 -0.4
1,053,879 + Psyr_0926 0.39 +3.7
1,053,880 - Psyr_0926 0.39 -1.1
1,053,880 - Psyr_0926 0.39 -2.0
1,053,880 - Psyr_0926 0.39 +1.7
1,053,880 - Psyr_0926 0.39 -2.5
1,053,912 + Psyr_0926 0.42 +0.4
1,053,913 - Psyr_0926 0.42 -4.5
1,053,991 - Psyr_0926 0.49 +3.4
1,053,991 - Psyr_0926 0.49 +2.9
1,053,991 - Psyr_0926 0.49 -1.5
1,054,029 + Psyr_0926 0.52 -2.8
1,054,029 + Psyr_0926 0.52 +4.3
1,054,029 + Psyr_0926 0.52 +2.4
1,054,030 - Psyr_0926 0.52 -1.5
1,054,030 - Psyr_0926 0.52 +0.9
1,054,030 - Psyr_0926 0.52 +2.6
1,054,042 - Psyr_0926 0.53 -2.5
1,054,149 + Psyr_0926 0.63 +2.0
1,054,150 - Psyr_0926 0.63 +0.4
1,054,250 - Psyr_0926 0.72 -3.6
1,054,452 + -1.9
1,054,452 + +2.9
1,054,453 - +3.1
1,054,453 - +0.1
1,054,555 + +2.1
1,054,555 + +2.4
1,054,556 - +3.2
1,054,556 - +4.0
1,054,556 - -4.1
1,054,560 + -0.7
1,054,560 + -1.9
1,054,561 - -1.5
1,054,561 - -0.9
1,054,561 - +0.2
1,054,561 - +2.9
1,054,561 - -0.7
1,054,561 - +3.1
1,054,561 - -1.8
1,054,561 - +2.4
1,054,573 - -2.8
1,054,586 - -0.7
1,054,592 + +0.1
1,054,593 - -0.9
1,054,597 - -1.8
1,054,597 - +2.1
1,054,618 - +3.1
1,054,668 - -1.6
1,054,668 - +0.4
1,055,049 + Psyr_0927 0.37 +3.1
1,055,061 - Psyr_0927 0.38 +4.0
1,055,135 + Psyr_0927 0.47 -2.6
1,055,245 - Psyr_0927 0.59 -2.3
1,055,375 + Psyr_0927 0.73 -1.3
1,055,376 - Psyr_0927 0.73 +1.1
1,055,376 - Psyr_0927 0.73 -2.3
1,055,416 - Psyr_0927 0.78 -1.7
1,055,560 - -0.9
1,055,563 + +0.0
1,055,657 - -0.2
1,055,852 - Psyr_0928 0.12 -0.9
1,055,852 - Psyr_0928 0.12 -2.1
1,055,982 - Psyr_0928 0.20 -1.5
1,055,982 - Psyr_0928 0.20 +3.2
1,055,982 - Psyr_0928 0.20 -1.3
1,056,035 + Psyr_0928 0.23 +1.1
1,056,051 + Psyr_0928 0.24 -1.0
1,056,086 - Psyr_0928 0.26 -2.9
1,056,086 - Psyr_0928 0.26 +2.1
1,056,088 + Psyr_0928 0.26 +1.1
1,056,089 - Psyr_0928 0.26 +1.7
1,056,090 + Psyr_0928 0.27 +2.7
1,056,091 - Psyr_0928 0.27 -0.2
1,056,091 - Psyr_0928 0.27 -3.3
1,056,135 + Psyr_0928 0.29 -1.6
1,056,152 - Psyr_0928 0.30 +0.1
1,056,288 - Psyr_0928 0.39 -1.6
1,056,325 + Psyr_0928 0.41 -2.1
1,056,367 + Psyr_0928 0.43 -3.5
1,056,368 - Psyr_0928 0.44 +2.4
1,056,375 + Psyr_0928 0.44 +0.6
1,056,375 + Psyr_0928 0.44 +3.2
1,056,375 + Psyr_0928 0.44 -2.2
1,056,424 + Psyr_0928 0.47 -0.9
1,056,434 - Psyr_0928 0.48 -1.8
1,056,449 + Psyr_0928 0.48 +3.1
1,056,453 + Psyr_0928 0.49 -0.3
1,056,453 + Psyr_0928 0.49 +1.1
1,056,454 - Psyr_0928 0.49 -4.5
1,056,454 - Psyr_0928 0.49 +1.1
1,056,454 - Psyr_0928 0.49 +2.4
1,056,533 + Psyr_0928 0.54 +3.2
1,056,574 + Psyr_0928 0.56 +0.1
1,056,575 - Psyr_0928 0.56 -2.1
1,056,575 - Psyr_0928 0.56 -2.8

Or see this region's nucleotide sequence