Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0885

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,006,865	+				+2.4
1,006,865	+				+0.1
1,006,866	-				-3.1
1,006,879	+				+3.7
1,006,879	+				-2.2
1,006,880	-				+1.1
1,006,880	-				+1.7
1,006,882	-				-1.9
1,006,926	+				-0.3
1,006,927	-				+3.4
1,006,958	-				-2.3
1,007,031	+				+0.7
1,007,032	-				-1.7
1,007,032	-				-1.2
1,007,084	-				+0.1
1,007,084	-				-0.0
1,007,098	-				+3.9
1,007,104	+				+0.1
1,007,104	+				+0.7
1,007,107	+				+3.1
1,007,108	-				-0.1
1,007,130	+				+0.6
1,007,130	+				-0.6
1,007,130	+				+0.1
1,007,130	+				-1.5
1,007,130	+				+2.9
1,007,131	-				+3.1
1,007,131	-				-1.4
1,007,131	-				+0.1
1,007,131	-				+2.4
1,007,131	-				+0.2
1,007,131	-				-2.8
1,007,135	-				-1.7
1,007,136	+				-0.4
1,007,136	+				-1.3
1,007,136	+				-1.6
1,007,136	+				+0.7
1,007,136	+				+1.1
1,007,136	+				-1.2
1,007,136	+				-1.0
1,007,137	-				+3.8
1,007,137	-				+0.1
1,007,137	-				+3.1
1,007,137	-				+2.9
1,007,137	-				+1.1
1,007,141	-				-0.1
1,007,141	-				-3.0
1,007,141	-				-0.7
1,007,141	-				-1.4
1,007,193	+				+0.3
1,007,193	+				+0.3
1,007,194	-				-0.9
1,007,216	+				-1.6
1,007,216	+				-2.0
1,007,216	+				-2.7
1,007,216	+				-0.0
1,007,217	-				+1.1
1,007,217	-				+3.7
1,007,217	-				+2.9
1,007,217	-				+4.0
1,007,217	-				+1.1
1,007,217	-				+4.1
1,007,289	+				+3.5
1,007,290	-				+3.4
1,007,290	-				+4.1
1,007,290	-				+0.3
1,007,337	+				-1.8
1,007,441	+		Psyr_0884	0.19	-0.7
1,007,441	+		Psyr_0884	0.19	-0.9
1,007,441	+		Psyr_0884	0.19	-2.8
1,007,441	+		Psyr_0884	0.19	-2.3
1,007,442	-		Psyr_0884	0.19	-1.4
1,007,442	-		Psyr_0884	0.19	-0.3
1,007,442	-		Psyr_0884	0.19	+1.1
1,007,627	+		Psyr_0884	0.59	+1.7
1,007,627	+		Psyr_0884	0.59	-1.4
1,007,627	+		Psyr_0884	0.59	+3.2
1,007,627	+		Psyr_0884	0.59	-0.5
1,007,627	+		Psyr_0884	0.59	+3.5
1,007,627	+		Psyr_0884	0.59	+3.5
1,007,628	-		Psyr_0884	0.60	+3.4
1,007,628	-		Psyr_0884	0.60	-3.9
1,007,659	+		Psyr_0884	0.66	+2.4
1,007,659	+		Psyr_0884	0.66	-0.7
1,007,659	+		Psyr_0884	0.66	-1.5
1,007,659	+		Psyr_0884	0.66	-1.0
1,007,660	-		Psyr_0884	0.66	+2.4
1,007,702	+		Psyr_0884	0.76	+1.1
1,007,702	+		Psyr_0884	0.76	+0.3
1,007,703	-		Psyr_0884	0.76	-1.9
1,007,741	+		Psyr_0884	0.84	-1.9
1,007,983	+		Psyr_0885	0.38	-0.9
1,008,112	+		Psyr_0885	0.67	-2.2
1,008,112	+		Psyr_0885	0.67	-1.0
1,008,287	+				-0.1
1,008,290	+				-0.5
1,008,340	+				+3.5
1,008,340	+				+0.4
1,008,341	-				-0.1
1,008,359	+				-1.4
1,008,391	+				-0.5
1,008,391	+				+4.2
1,008,391	+				+2.4
1,008,391	+				-0.6
1,008,392	-				+2.1
1,008,392	-				+0.1
1,008,392	-				+0.2
1,008,392	-				+3.1
1,008,392	-				-0.2
1,008,392	-				+3.2
1,008,396	+				-1.5
1,008,396	+				+2.4
1,008,397	-				+2.1
1,008,398	+				+2.4
1,008,398	+				-1.5
1,008,398	+				-1.4
1,008,398	+				-2.8
1,008,398	+				-2.4
1,008,398	+				-0.3
1,008,398	+				+2.4
1,008,399	-				-1.3
1,008,399	-				+2.1
1,008,399	-				+1.7
1,008,404	+				-4.0
1,008,432	+				-1.2
1,008,432	+				+1.0
1,008,432	+				-1.1
1,008,432	+				+3.5
1,008,432	+				-3.1
1,008,432	+				+2.9
1,008,432	+				-2.5
1,008,432	+				+2.7
1,008,433	-				-0.9
1,008,433	-				+3.8
1,008,433	-				+2.1
1,008,433	-				+0.4
1,008,433	-				-0.9
1,008,472	+				+1.7
1,008,472	+				-0.4
1,008,472	+				-0.6
1,008,472	+				-1.2
1,008,472	+				+0.9
1,008,472	+				+1.2
1,008,473	-				-2.5
1,008,473	-				-0.3
1,008,473	-				+2.1
1,008,473	-				+0.1
1,008,473	-				-3.3
1,008,473	-				+3.9
1,008,473	-				-2.1
1,008,473	-				+0.1
1,008,473	-				+2.7
1,008,473	-				-1.2
1,008,473	-				+4.5
1,008,473	-				-1.8
1,008,473	-				+2.1
1,008,473	-				+3.1
1,008,474	+				-0.7
1,008,474	+				-1.8
1,008,474	+				-1.6
1,008,474	+				-3.7
1,008,474	+				+2.4
1,008,474	+				+0.7
1,008,474	+				+4.2
1,008,474	+				+2.1
1,008,474	+				-1.6
1,008,474	+				+0.5
1,008,474	+				-1.8
1,008,475	-				+3.2
1,008,475	-				+2.7
1,008,475	-				-2.0
1,008,475	-				-0.6
1,008,475	-				+1.7
1,008,475	-				+0.2
1,008,475	-				-2.8
1,008,475	-				-0.4
1,008,475	-				+1.1
1,008,475	-				-1.4
1,008,475	-				+3.2
1,008,475	-				-0.8
1,008,548	+				+0.1
1,008,549	-				-1.2
1,008,987	-		Psyr_0886	0.46	+3.2
1,008,987	-		Psyr_0886	0.46	+4.2
1,009,022	+		Psyr_0886	0.49	-1.4
1,009,022	+		Psyr_0886	0.49	+2.7
1,009,023	-		Psyr_0886	0.49	+3.5
1,009,141	+		Psyr_0886	0.61	+3.4
1,009,141	+		Psyr_0886	0.61	+0.6
1,009,142	-		Psyr_0886	0.61	-0.9
1,009,142	-		Psyr_0886	0.61	-1.7
1,009,142	-		Psyr_0886	0.61	+3.2
1,009,155	+		Psyr_0886	0.63	-0.5