Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0860 and Psyr_0861 are separated by 107 nucleotides Psyr_0861 and Psyr_0862 are separated by 65 nucleotides Psyr_0862 and Psyr_0863 are separated by 227 nucleotides Psyr_0863 and Psyr_0864 are separated by 108 nucleotides
Psyr_0860: Psyr_0860 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 978,915 to 980,591
_0860
Psyr_0861: Psyr_0861 - Metal-dependent phosphohydrolase, HD subdomain protein, at 980,699 to 981,358
_0861
Psyr_0862: Psyr_0862 - Acyltransferase 3, at 981,424 to 983,445
_0862
Psyr_0863: Psyr_0863 - PhnA protein, at 983,673 to 984,047
_0863
Psyr_0864: Psyr_0864 - Protein of unknown function DUF393, at 984,156 to 984,587
_0864
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 980.461 kb on - strand at 980.490 kb on + strand at 980.490 kb on + strand at 980.492 kb on + strand at 980.492 kb on + strand at 980.493 kb on - strand at 980.566 kb on - strand at 980.566 kb on - strand at 980.605 kb on + strand at 980.605 kb on + strand at 980.607 kb on + strand at 980.607 kb on + strand at 980.608 kb on - strand at 980.608 kb on - strand at 980.637 kb on + strand at 980.863 kb on - strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.889 kb on + strand, within Psyr_0861 at 980.898 kb on + strand, within Psyr_0861 at 980.899 kb on - strand, within Psyr_0861 at 980.924 kb on + strand, within Psyr_0861 at 980.925 kb on - strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.928 kb on + strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.929 kb on - strand, within Psyr_0861 at 980.987 kb on + strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 980.988 kb on - strand, within Psyr_0861 at 981.095 kb on + strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.096 kb on - strand, within Psyr_0861 at 981.396 kb on - strand at 981.396 kb on - strand at 981.415 kb on - strand at 981.439 kb on - strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.503 kb on + strand at 981.504 kb on - strand at 981.504 kb on - strand at 981.504 kb on - strand at 981.714 kb on - strand, within Psyr_0862 at 981.824 kb on - strand, within Psyr_0862 at 981.824 kb on - strand, within Psyr_0862 at 981.878 kb on + strand, within Psyr_0862 at 981.879 kb on - strand, within Psyr_0862 at 981.902 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.917 kb on + strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 981.918 kb on - strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.016 kb on + strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.017 kb on - strand, within Psyr_0862 at 982.508 kb on + strand, within Psyr_0862 at 982.508 kb on + strand, within Psyr_0862 at 982.547 kb on + strand, within Psyr_0862 at 982.548 kb on - strand, within Psyr_0862 at 982.556 kb on + strand, within Psyr_0862 at 982.557 kb on - strand, within Psyr_0862 at 982.672 kb on - strand, within Psyr_0862 at 982.756 kb on + strand, within Psyr_0862 at 982.757 kb on - strand, within Psyr_0862 at 982.757 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.800 kb on - strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.853 kb on + strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.854 kb on - strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.991 kb on + strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.992 kb on - strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.994 kb on + strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 982.995 kb on - strand, within Psyr_0862 at 983.022 kb on + strand, within Psyr_0862 at 983.023 kb on - strand, within Psyr_0862 at 983.023 kb on - strand, within Psyr_0862 at 983.061 kb on - strand, within Psyr_0862 at 983.061 kb on - strand, within Psyr_0862 at 983.129 kb on + strand, within Psyr_0862 at 983.129 kb on + strand, within Psyr_0862 at 983.130 kb on - strand, within Psyr_0862 at 983.130 kb on - strand, within Psyr_0862 at 983.228 kb on + strand, within Psyr_0862 at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.257 kb on + strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.258 kb on - strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.463 kb on + strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.464 kb on - strand at 983.480 kb on + strand at 983.480 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.496 kb on + strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.497 kb on - strand at 983.501 kb on - strand at 983.529 kb on + strand at 983.530 kb on - strand at 983.578 kb on - strand at 983.618 kb on + strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.619 kb on - strand at 983.665 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.667 kb on + strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.668 kb on - strand at 983.743 kb on - strand, within Psyr_0863 at 983.743 kb on - strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.748 kb on + strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 983.749 kb on - strand, within Psyr_0863 at 984.353 kb on + strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864 at 984.354 kb on - strand, within Psyr_0864
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 980,461 - +0.6 980,490 + -1.3 980,490 + -0.9 980,492 + -1.6 980,492 + +1.1 980,493 - +2.4 980,566 - -1.9 980,566 - +1.4 980,605 + -2.3 980,605 + -0.7 980,607 + -0.0 980,607 + -2.2 980,608 - +3.3 980,608 - +2.3 980,637 + -0.9 980,863 - Psyr_0861 0.25 -0.3 980,889 + Psyr_0861 0.29 -1.3 980,889 + Psyr_0861 0.29 +4.0 980,898 + Psyr_0861 0.30 -0.9 980,899 - Psyr_0861 0.30 +0.1 980,924 + Psyr_0861 0.34 -1.2 980,925 - Psyr_0861 0.34 -1.4 980,928 + Psyr_0861 0.35 +0.6 980,928 + Psyr_0861 0.35 +0.4 980,928 + Psyr_0861 0.35 -0.3 980,928 + Psyr_0861 0.35 -0.8 980,928 + Psyr_0861 0.35 +3.4 980,929 - Psyr_0861 0.35 -3.0 980,929 - Psyr_0861 0.35 +4.8 980,929 - Psyr_0861 0.35 +3.1 980,929 - Psyr_0861 0.35 -2.3 980,929 - Psyr_0861 0.35 +1.7 980,929 - Psyr_0861 0.35 +0.4 980,929 - Psyr_0861 0.35 -2.6 980,929 - Psyr_0861 0.35 +1.3 980,987 + Psyr_0861 0.44 -0.7 980,988 - Psyr_0861 0.44 +2.1 980,988 - Psyr_0861 0.44 -0.2 981,095 + Psyr_0861 0.60 -0.5 981,096 - Psyr_0861 0.60 -2.4 981,096 - Psyr_0861 0.60 +0.8 981,096 - Psyr_0861 0.60 -1.0 981,396 - +2.9 981,396 - -2.4 981,415 - +4.1 981,439 - -0.9 981,500 + -1.7 981,500 + +3.6 981,500 + +3.6 981,501 - +3.1 981,501 - -3.3 981,501 - -1.1 981,501 - +2.7 981,503 + -2.1 981,504 - -2.3 981,504 - +0.1 981,504 - +3.3 981,714 - Psyr_0862 0.14 -1.3 981,824 - Psyr_0862 0.20 +1.7 981,824 - Psyr_0862 0.20 -0.7 981,878 + Psyr_0862 0.22 -1.0 981,879 - Psyr_0862 0.23 +0.8 981,902 + Psyr_0862 0.24 -1.2 981,917 + Psyr_0862 0.24 -1.9 981,917 + Psyr_0862 0.24 -0.3 981,917 + Psyr_0862 0.24 +0.1 981,918 - Psyr_0862 0.24 +0.1 981,918 - Psyr_0862 0.24 -0.2 981,918 - Psyr_0862 0.24 -0.9 982,016 + Psyr_0862 0.29 +4.0 982,016 + Psyr_0862 0.29 -0.5 982,016 + Psyr_0862 0.29 -1.6 982,016 + Psyr_0862 0.29 -1.3 982,016 + Psyr_0862 0.29 +1.7 982,016 + Psyr_0862 0.29 -0.6 982,017 - Psyr_0862 0.29 -0.9 982,017 - Psyr_0862 0.29 -1.1 982,017 - Psyr_0862 0.29 +2.4 982,017 - Psyr_0862 0.29 +4.2 982,508 + Psyr_0862 0.54 +1.7 982,508 + Psyr_0862 0.54 +2.1 982,547 + Psyr_0862 0.56 -2.8 982,548 - Psyr_0862 0.56 -0.1 982,556 + Psyr_0862 0.56 +2.7 982,557 - Psyr_0862 0.56 +2.3 982,672 - Psyr_0862 0.62 +0.5 982,756 + Psyr_0862 0.66 +3.1 982,757 - Psyr_0862 0.66 +0.3 982,757 - Psyr_0862 0.66 -1.5 982,800 - Psyr_0862 0.68 -0.0 982,800 - Psyr_0862 0.68 -1.6 982,800 - Psyr_0862 0.68 -0.5 982,800 - Psyr_0862 0.68 +3.0 982,800 - Psyr_0862 0.68 +2.7 982,800 - Psyr_0862 0.68 -1.2 982,800 - Psyr_0862 0.68 +3.3 982,853 + Psyr_0862 0.71 -0.5 982,853 + Psyr_0862 0.71 -1.8 982,853 + Psyr_0862 0.71 +0.1 982,854 - Psyr_0862 0.71 +1.1 982,854 - Psyr_0862 0.71 +1.7 982,854 - Psyr_0862 0.71 +0.2 982,991 + Psyr_0862 0.77 +3.4 982,991 + Psyr_0862 0.77 +4.4 982,991 + Psyr_0862 0.77 -0.5 982,991 + Psyr_0862 0.77 +3.8 982,991 + Psyr_0862 0.77 -1.8 982,991 + Psyr_0862 0.77 +3.3 982,991 + Psyr_0862 0.77 -1.3 982,992 - Psyr_0862 0.78 -0.2 982,992 - Psyr_0862 0.78 +0.1 982,992 - Psyr_0862 0.78 +2.0 982,992 - Psyr_0862 0.78 +1.1 982,992 - Psyr_0862 0.78 -1.5 982,992 - Psyr_0862 0.78 +1.4 982,992 - Psyr_0862 0.78 -1.2 982,994 + Psyr_0862 0.78 -1.0 982,994 + Psyr_0862 0.78 +1.7 982,994 + Psyr_0862 0.78 +0.8 982,995 - Psyr_0862 0.78 +0.0 982,995 - Psyr_0862 0.78 +1.0 982,995 - Psyr_0862 0.78 -2.5 982,995 - Psyr_0862 0.78 -4.1 982,995 - Psyr_0862 0.78 +2.4 982,995 - Psyr_0862 0.78 -2.1 982,995 - Psyr_0862 0.78 +2.7 983,022 + Psyr_0862 0.79 +3.1 983,023 - Psyr_0862 0.79 +3.7 983,023 - Psyr_0862 0.79 +1.2 983,061 - Psyr_0862 0.81 -1.8 983,061 - Psyr_0862 0.81 +2.3 983,129 + Psyr_0862 0.84 +2.1 983,129 + Psyr_0862 0.84 +3.3 983,130 - Psyr_0862 0.84 +0.1 983,130 - Psyr_0862 0.84 +0.2 983,228 + Psyr_0862 0.89 +1.1 983,257 + -1.8 983,257 + -2.3 983,257 + +2.9 983,257 + -0.6 983,257 + -3.2 983,257 + -0.6 983,258 - +1.7 983,258 - +4.0 983,258 - +2.4 983,258 - +1.3 983,463 + -1.3 983,463 + +3.4 983,463 + +5.1 983,463 + -0.3 983,463 + -3.1 983,464 - -3.7 983,464 - +2.4 983,464 - -2.1 983,464 - -1.3 983,480 + -3.8 983,480 + -1.6 983,496 + +3.1 983,496 + +3.6 983,496 + -1.7 983,496 + +0.7 983,496 + -0.9 983,496 + -2.0 983,496 + +2.1 983,496 + +2.1 983,496 + -1.5 983,496 + +0.1 983,496 + +2.9 983,497 - +0.1 983,497 - -0.3 983,497 - +4.3 983,497 - -1.6 983,501 - +1.7 983,529 + +2.7 983,530 - -0.2 983,578 - -1.2 983,618 + -1.2 983,619 - -3.8 983,619 - +0.1 983,619 - -1.0 983,665 + +0.4 983,667 + +0.1 983,667 + -0.9 983,667 + -0.8 983,667 + +1.7 983,667 + +4.7 983,667 + -0.5 983,667 + -0.3 983,667 + -0.6 983,667 + +2.4 983,667 + +2.7 983,667 + +2.1 983,668 - -2.9 983,668 - -0.9 983,668 - -1.9 983,668 - +3.1 983,668 - -3.8 983,668 - +0.2 983,668 - -2.3 983,743 - Psyr_0863 0.19 -0.5 983,743 - Psyr_0863 0.19 -0.7 983,748 + Psyr_0863 0.20 +3.1 983,748 + Psyr_0863 0.20 +0.1 983,749 - Psyr_0863 0.20 -0.7 983,749 - Psyr_0863 0.20 -0.3 983,749 - Psyr_0863 0.20 +3.3 983,749 - Psyr_0863 0.20 -3.1 983,749 - Psyr_0863 0.20 +0.1 983,749 - Psyr_0863 0.20 -4.2 983,749 - Psyr_0863 0.20 +2.7 983,749 - Psyr_0863 0.20 +1.1 983,749 - Psyr_0863 0.20 +0.0 984,353 + Psyr_0864 0.46 -1.8 984,354 - Psyr_0864 0.46 +0.3 984,354 - Psyr_0864 0.46 +3.3
Or see this region's nucleotide sequence