Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0823

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0821 and Psyr_0822 overlap by 1 nucleotidesPsyr_0822 and Psyr_0823 are separated by 12 nucleotidesPsyr_0823 and Psyr_0824 are separated by 39 nucleotides Psyr_0821: Psyr_0821 - PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase, at 926,782 to 929,652 _0821 Psyr_0822: Psyr_0822 - 1-phosphofructokinase, at 929,652 to 930,593 _0822 Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348 _0823 Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566 _0824 Position (kb) 930 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 929.650 kb on + strandat 929.650 kb on + strandat 929.651 kb on - strandat 929.782 kb on + strand, within Psyr_0822at 929.783 kb on - strand, within Psyr_0822at 930.524 kb on + strandat 930.571 kb on + strandat 930.572 kb on - strandat 930.591 kb on + strandat 930.591 kb on + strandat 930.592 kb on - strandat 930.592 kb on - strandat 930.592 kb on - strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.655 kb on + strandat 931.003 kb on + strand, within Psyr_0823at 931.003 kb on + strand, within Psyr_0823at 931.004 kb on - strand, within Psyr_0823at 931.059 kb on + strand, within Psyr_0823at 931.059 kb on + strand, within Psyr_0823at 931.197 kb on + strand, within Psyr_0823at 931.198 kb on - strand, within Psyr_0823at 931.198 kb on - strand, within Psyr_0823at 931.326 kb on + strand, within Psyr_0823at 931.327 kb on - strand, within Psyr_0823at 931.577 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.989 kb on - strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.245 kb on - strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.783 kb on + strand, within Psyr_0824at 933.064 kb on + strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.104 kb on - strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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929,650 + -0.9
929,650 + -0.3
929,651 - +3.9
929,782 + Psyr_0822 0.14 -1.2
929,783 - Psyr_0822 0.14 -2.1
930,524 + +2.5
930,571 + +0.2
930,572 - -1.3
930,591 + +0.1
930,591 + +0.1
930,592 - -0.9
930,592 - +2.3
930,592 - -2.3
930,619 + +1.1
930,619 + -0.5
930,619 + +2.1
930,619 + -1.3
930,619 + -3.4
930,619 + +1.1
930,619 + -0.6
930,620 - -0.3
930,620 - +3.6
930,620 - +2.9
930,620 - -1.6
930,655 + +1.1
931,003 + Psyr_0823 0.23 +5.2
931,003 + Psyr_0823 0.23 -2.1
931,004 - Psyr_0823 0.23 +0.2
931,059 + Psyr_0823 0.26 +2.1
931,059 + Psyr_0823 0.26 +0.4
931,197 + Psyr_0823 0.34 +2.7
931,198 - Psyr_0823 0.34 +1.7
931,198 - Psyr_0823 0.34 -2.4
931,326 + Psyr_0823 0.41 +1.7
931,327 - Psyr_0823 0.41 +3.5
931,577 + Psyr_0823 0.56 +3.7
931,743 + Psyr_0823 0.65 +3.8
931,743 + Psyr_0823 0.65 +1.7
931,743 + Psyr_0823 0.65 -1.2
931,743 + Psyr_0823 0.65 +0.1
931,743 + Psyr_0823 0.65 -1.9
931,743 + Psyr_0823 0.65 +4.1
931,743 + Psyr_0823 0.65 -1.2
931,743 + Psyr_0823 0.65 -2.7
931,743 + Psyr_0823 0.65 +1.1
931,743 + Psyr_0823 0.65 +2.1
931,744 - Psyr_0823 0.65 -4.1
931,744 - Psyr_0823 0.65 +3.3
931,744 - Psyr_0823 0.65 +3.5
931,744 - Psyr_0823 0.65 +1.4
931,744 - Psyr_0823 0.65 +0.1
931,744 - Psyr_0823 0.65 -1.9
931,744 - Psyr_0823 0.65 -1.4
931,744 - Psyr_0823 0.65 +1.1
931,926 + Psyr_0823 0.76 +2.5
931,926 + Psyr_0823 0.76 +3.9
931,927 - Psyr_0823 0.76 +2.1
931,927 - Psyr_0823 0.76 +1.7
931,927 - Psyr_0823 0.76 +3.7
931,988 + Psyr_0823 0.79 -2.8
931,988 + Psyr_0823 0.79 +0.0
931,989 - Psyr_0823 0.79 +2.5
932,163 + Psyr_0823 0.89 +1.5
932,163 + Psyr_0823 0.89 -0.6
932,163 + Psyr_0823 0.89 -3.0
932,163 + Psyr_0823 0.89 +1.7
932,164 - Psyr_0823 0.89 +2.1
932,164 - Psyr_0823 0.89 +3.6
932,164 - Psyr_0823 0.89 +1.7
932,164 - Psyr_0823 0.89 +4.6
932,245 - +3.8
932,289 + -0.9
932,289 + +2.9
932,289 + +2.1
932,289 + -1.4
932,290 - -1.4
932,290 - +2.5
932,290 - -3.1
932,290 - -0.8
932,783 + Psyr_0824 0.34 -0.7
933,064 + Psyr_0824 0.57 +0.3
933,065 - Psyr_0824 0.57 +1.5
933,065 - Psyr_0824 0.57 +1.7
933,103 + Psyr_0824 0.61 -0.4
933,103 + Psyr_0824 0.61 +1.7
933,103 + Psyr_0824 0.61 +0.1
933,104 - Psyr_0824 0.61 -1.1
933,199 + Psyr_0824 0.69 -1.0
933,199 + Psyr_0824 0.69 +4.1
933,199 + Psyr_0824 0.69 +2.5
933,199 + Psyr_0824 0.69 -0.1
933,200 - Psyr_0824 0.69 +0.2
933,200 - Psyr_0824 0.69 +0.0
933,200 - Psyr_0824 0.69 +3.6
933,200 - Psyr_0824 0.69 +2.7

Or see this region's nucleotide sequence