Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0761

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0759 and Psyr_0760 are separated by 30 nucleotidesPsyr_0760 and Psyr_0761 overlap by 4 nucleotidesPsyr_0761 and Psyr_0762 are separated by 21 nucleotides Psyr_0759: Psyr_0759 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 864,581 to 865,723 _0759 Psyr_0760: Psyr_0760 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 865,754 to 866,596 _0760 Psyr_0761: Psyr_0761 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 866,593 to 867,555 _0761 Psyr_0762: Psyr_0762 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 867,577 to 868,851 _0762 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 865.675 kb on + strandat 865.676 kb on - strandat 865.709 kb on + strandat 865.709 kb on + strandat 865.710 kb on - strandat 865.710 kb on - strandat 866.157 kb on + strand, within Psyr_0760at 866.157 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.313 kb on + strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.421 kb on + strand, within Psyr_0760at 866.422 kb on - strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.452 kb on - strand, within Psyr_0760at 866.502 kb on + strand, within Psyr_0760at 866.506 kb on - strand, within Psyr_0760at 866.506 kb on - strand, within Psyr_0760at 866.627 kb on + strandat 866.627 kb on + strandat 866.628 kb on - strandat 866.628 kb on - strandat 866.628 kb on - strandat 866.633 kb on + strandat 866.633 kb on + strandat 866.634 kb on - strandat 866.634 kb on - strandat 866.674 kb on - strandat 866.729 kb on + strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.910 kb on - strand, within Psyr_0761at 867.254 kb on + strand, within Psyr_0761at 867.255 kb on - strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.533 kb on + strandat 867.541 kb on - strandat 867.541 kb on - strandat 867.644 kb on - strandat 867.644 kb on - strandat 867.644 kb on - strandat 867.644 kb on - strandat 867.663 kb on + strandat 867.664 kb on - strandat 867.803 kb on + strand, within Psyr_0762at 867.803 kb on + strand, within Psyr_0762at 867.828 kb on - strand, within Psyr_0762at 867.828 kb on - strand, within Psyr_0762at 867.828 kb on - strand, within Psyr_0762at 867.828 kb on - strand, within Psyr_0762at 867.828 kb on - strand, within Psyr_0762at 867.875 kb on + strand, within Psyr_0762at 867.875 kb on + strand, within Psyr_0762at 868.010 kb on - strand, within Psyr_0762at 868.046 kb on + strand, within Psyr_0762at 868.047 kb on - strand, within Psyr_0762at 868.047 kb on - strand, within Psyr_0762at 868.047 kb on - strand, within Psyr_0762at 868.047 kb on - strand, within Psyr_0762at 868.112 kb on + strand, within Psyr_0762at 868.112 kb on + strand, within Psyr_0762at 868.112 kb on + strand, within Psyr_0762at 868.112 kb on + strand, within Psyr_0762at 868.113 kb on - strand, within Psyr_0762at 868.113 kb on - strand, within Psyr_0762at 868.277 kb on + strand, within Psyr_0762at 868.277 kb on + strand, within Psyr_0762at 868.278 kb on - strand, within Psyr_0762at 868.298 kb on + strand, within Psyr_0762at 868.298 kb on + strand, within Psyr_0762at 868.298 kb on + strand, within Psyr_0762at 868.298 kb on + strand, within Psyr_0762at 868.298 kb on + strand, within Psyr_0762at 868.299 kb on - strand, within Psyr_0762at 868.299 kb on - strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.308 kb on + strand, within Psyr_0762at 868.309 kb on - strand, within Psyr_0762at 868.309 kb on - strand, within Psyr_0762at 868.397 kb on + strand, within Psyr_0762at 868.397 kb on + strand, within Psyr_0762at 868.398 kb on - strand, within Psyr_0762at 868.424 kb on + strand, within Psyr_0762at 868.424 kb on + strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.425 kb on - strand, within Psyr_0762at 868.505 kb on + strand, within Psyr_0762at 868.505 kb on + strand, within Psyr_0762at 868.506 kb on - strand, within Psyr_0762at 868.506 kb on - strand, within Psyr_0762at 868.506 kb on - strand, within Psyr_0762

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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865,675 + -0.1
865,676 - -1.1
865,709 + +0.3
865,709 + +4.0
865,710 - +2.9
865,710 - -1.2
866,157 + Psyr_0760 0.48 +0.0
866,157 + Psyr_0760 0.48 +2.1
866,187 + Psyr_0760 0.51 +2.5
866,187 + Psyr_0760 0.51 -2.1
866,187 + Psyr_0760 0.51 +4.1
866,187 + Psyr_0760 0.51 -0.7
866,187 + Psyr_0760 0.51 +0.2
866,187 + Psyr_0760 0.51 +2.7
866,187 + Psyr_0760 0.51 -2.1
866,187 + Psyr_0760 0.51 +0.5
866,188 - Psyr_0760 0.51 +1.4
866,188 - Psyr_0760 0.51 -0.3
866,188 - Psyr_0760 0.51 -0.9
866,188 - Psyr_0760 0.51 -1.0
866,313 + Psyr_0760 0.66 +3.1
866,314 - Psyr_0760 0.66 +1.6
866,314 - Psyr_0760 0.66 -1.0
866,314 - Psyr_0760 0.66 +2.5
866,314 - Psyr_0760 0.66 -0.8
866,421 + Psyr_0760 0.79 +0.4
866,422 - Psyr_0760 0.79 -1.9
866,451 + Psyr_0760 0.83 -1.6
866,451 + Psyr_0760 0.83 -1.5
866,451 + Psyr_0760 0.83 +5.0
866,452 - Psyr_0760 0.83 +0.6
866,502 + Psyr_0760 0.89 +0.2
866,506 - Psyr_0760 0.89 +2.5
866,506 - Psyr_0760 0.89 -0.7
866,627 + -3.2
866,627 + -0.5
866,628 - +3.1
866,628 - -1.1
866,628 - -1.5
866,633 + -0.7
866,633 + +0.1
866,634 - -0.9
866,634 - +0.0
866,674 - -0.7
866,729 + Psyr_0761 0.14 -0.5
866,730 - Psyr_0761 0.14 -2.2
866,730 - Psyr_0761 0.14 +2.7
866,730 - Psyr_0761 0.14 +1.7
866,774 + Psyr_0761 0.19 -0.6
866,774 + Psyr_0761 0.19 +1.1
866,774 + Psyr_0761 0.19 -0.4
866,774 + Psyr_0761 0.19 +3.1
866,774 + Psyr_0761 0.19 +3.6
866,774 + Psyr_0761 0.19 -3.5
866,774 + Psyr_0761 0.19 -1.0
866,774 + Psyr_0761 0.19 +0.3
866,774 + Psyr_0761 0.19 +0.7
866,775 - Psyr_0761 0.19 +2.5
866,775 - Psyr_0761 0.19 -0.3
866,775 - Psyr_0761 0.19 +1.7
866,775 - Psyr_0761 0.19 +0.1
866,775 - Psyr_0761 0.19 -0.1
866,910 - Psyr_0761 0.33 +4.5
867,254 + Psyr_0761 0.69 +0.1
867,255 - Psyr_0761 0.69 -0.9
867,332 + Psyr_0761 0.77 +1.1
867,332 + Psyr_0761 0.77 +0.4
867,332 + Psyr_0761 0.77 -1.6
867,332 + Psyr_0761 0.77 +4.4
867,333 - Psyr_0761 0.77 -1.9
867,333 - Psyr_0761 0.77 +0.2
867,333 - Psyr_0761 0.77 +0.3
867,333 - Psyr_0761 0.77 -1.6
867,493 + +3.6
867,493 + -0.2
867,493 + -0.5
867,493 + -1.5
867,493 + +1.1
867,493 + +2.5
867,494 - +0.2
867,494 - -0.7
867,494 - -1.4
867,494 - +3.7
867,533 + -1.8
867,541 - -0.3
867,541 - -0.5
867,644 - +2.1
867,644 - +0.8
867,644 - +0.1
867,644 - +2.5
867,663 + -0.9
867,664 - +0.4
867,803 + Psyr_0762 0.18 -0.1
867,803 + Psyr_0762 0.18 -0.9
867,828 - Psyr_0762 0.20 -1.3
867,828 - Psyr_0762 0.20 +1.7
867,828 - Psyr_0762 0.20 +1.1
867,828 - Psyr_0762 0.20 +1.7
867,828 - Psyr_0762 0.20 +0.6
867,875 + Psyr_0762 0.23 +1.8
867,875 + Psyr_0762 0.23 +2.7
868,010 - Psyr_0762 0.34 -0.8
868,046 + Psyr_0762 0.37 +3.1
868,047 - Psyr_0762 0.37 +2.1
868,047 - Psyr_0762 0.37 +0.4
868,047 - Psyr_0762 0.37 -0.4
868,047 - Psyr_0762 0.37 -0.8
868,112 + Psyr_0762 0.42 +0.5
868,112 + Psyr_0762 0.42 -2.0
868,112 + Psyr_0762 0.42 +3.3
868,112 + Psyr_0762 0.42 -0.8
868,113 - Psyr_0762 0.42 +2.5
868,113 - Psyr_0762 0.42 -1.1
868,277 + Psyr_0762 0.55 -1.2
868,277 + Psyr_0762 0.55 +3.3
868,278 - Psyr_0762 0.55 +4.3
868,298 + Psyr_0762 0.57 +0.9
868,298 + Psyr_0762 0.57 +3.3
868,298 + Psyr_0762 0.57 -0.9
868,298 + Psyr_0762 0.57 +0.7
868,298 + Psyr_0762 0.57 +2.5
868,299 - Psyr_0762 0.57 -1.9
868,299 - Psyr_0762 0.57 -0.2
868,308 + Psyr_0762 0.57 +0.4
868,308 + Psyr_0762 0.57 +1.7
868,308 + Psyr_0762 0.57 +0.8
868,308 + Psyr_0762 0.57 +4.1
868,308 + Psyr_0762 0.57 +3.5
868,308 + Psyr_0762 0.57 -1.1
868,309 - Psyr_0762 0.57 +2.0
868,309 - Psyr_0762 0.57 +0.8
868,397 + Psyr_0762 0.64 +3.1
868,397 + Psyr_0762 0.64 +2.5
868,398 - Psyr_0762 0.64 -0.6
868,424 + Psyr_0762 0.66 +1.1
868,424 + Psyr_0762 0.66 +2.5
868,425 - Psyr_0762 0.67 +3.8
868,425 - Psyr_0762 0.67 -2.0
868,425 - Psyr_0762 0.67 +4.3
868,425 - Psyr_0762 0.67 +3.1
868,425 - Psyr_0762 0.67 +3.3
868,425 - Psyr_0762 0.67 -1.7
868,425 - Psyr_0762 0.67 +2.1
868,425 - Psyr_0762 0.67 +1.1
868,505 + Psyr_0762 0.73 +1.0
868,505 + Psyr_0762 0.73 +3.3
868,506 - Psyr_0762 0.73 -1.7
868,506 - Psyr_0762 0.73 +1.4
868,506 - Psyr_0762 0.73 -1.7

Or see this region's nucleotide sequence