Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0736

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0734 and Psyr_0735 are separated by 363 nucleotidesPsyr_0735 and Psyr_0736 overlap by 14 nucleotidesPsyr_0736 and Psyr_0737 are separated by 213 nucleotides Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123 _0734 Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921 _0735 Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153 _0736 Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780 _0737 Position (kb) 840 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 839.992 kb on - strand, within Psyr_0734at 839.997 kb on + strand, within Psyr_0734at 839.998 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.253 kb on - strandat 840.266 kb on + strandat 840.267 kb on - strandat 840.267 kb on - strandat 840.274 kb on + strandat 840.284 kb on - strandat 840.333 kb on - strandat 840.351 kb on - strandat 840.351 kb on - strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.454 kb on + strandat 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.892 kb on + strandat 840.938 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 841.143 kb on - strandat 841.143 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.155 kb on - strandat 841.159 kb on + strandat 841.160 kb on - strandat 841.160 kb on - strandat 841.223 kb on + strandat 841.223 kb on + strandat 841.224 kb on - strandat 841.340 kb on - strandat 841.354 kb on + strandat 841.357 kb on + strandat 841.446 kb on - strand, within Psyr_0737at 841.446 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.497 kb on + strand, within Psyr_0737at 841.519 kb on + strand, within Psyr_0737at 841.520 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.640 kb on - strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.642 kb on - strand, within Psyr_0737at 841.716 kb on + strand, within Psyr_0737at 841.784 kb on - strandat 841.880 kb on + strandat 841.881 kb on - strandat 841.885 kb on - strandat 841.895 kb on - strandat 841.965 kb on - strandat 842.014 kb on + strandat 842.024 kb on + strandat 842.024 kb on + strandat 842.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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839,992 - Psyr_0734 0.70 +3.6
839,997 + Psyr_0734 0.71 +2.1
839,998 - Psyr_0734 0.72 +1.1
840,012 - Psyr_0734 0.75 +0.1
840,012 - Psyr_0734 0.75 +3.7
840,012 - Psyr_0734 0.75 +4.2
840,012 - Psyr_0734 0.75 -0.0
840,012 - Psyr_0734 0.75 -1.6
840,252 + -0.9
840,252 + -1.3
840,252 + -1.5
840,252 + -2.0
840,253 - -2.7
840,266 + +0.1
840,267 - +3.1
840,267 - -1.1
840,274 + -2.1
840,284 - +0.9
840,333 - +4.0
840,351 - +2.7
840,351 - +0.9
840,452 + -0.2
840,452 + -2.7
840,452 + -1.8
840,452 + +3.3
840,452 + +1.0
840,454 + +0.7
840,829 - Psyr_0735 0.79 -2.5
840,829 - Psyr_0735 0.79 +3.1
840,829 - Psyr_0735 0.79 -1.1
840,829 - Psyr_0735 0.79 +4.2
840,892 + +2.9
840,938 - Psyr_0736 0.12 -1.0
840,957 - Psyr_0736 0.20 +2.1
840,957 - Psyr_0736 0.20 -2.4
840,957 - Psyr_0736 0.20 +2.1
840,957 - Psyr_0736 0.20 -3.3
840,957 - Psyr_0736 0.20 +4.0
840,957 - Psyr_0736 0.20 -2.1
841,143 - -0.9
841,143 - -1.4
841,152 - +2.1
841,152 - +0.0
841,152 - +0.5
841,154 + +0.3
841,154 + +1.1
841,154 + +3.3
841,154 + -1.2
841,154 + -1.2
841,155 - -0.9
841,159 + +0.3
841,160 - +0.2
841,160 - +0.7
841,223 + -1.5
841,223 + +2.7
841,224 - -1.9
841,340 - -3.5
841,354 + -1.8
841,357 + -0.8
841,446 - Psyr_0737 0.19 +0.4
841,446 - Psyr_0737 0.19 +1.1
841,487 - Psyr_0737 0.29 -1.6
841,487 - Psyr_0737 0.29 -0.0
841,497 + Psyr_0737 0.31 -0.5
841,519 + Psyr_0737 0.37 +0.1
841,520 - Psyr_0737 0.37 -0.1
841,545 - Psyr_0737 0.43 -0.8
841,545 - Psyr_0737 0.43 +2.1
841,571 - Psyr_0737 0.49 -2.3
841,571 - Psyr_0737 0.49 -2.2
841,571 - Psyr_0737 0.49 +0.1
841,571 - Psyr_0737 0.49 -1.2
841,574 + Psyr_0737 0.50 +0.1
841,574 + Psyr_0737 0.50 +2.7
841,575 - Psyr_0737 0.50 -0.1
841,575 - Psyr_0737 0.50 -0.4
841,640 - Psyr_0737 0.66 -0.3
841,641 + Psyr_0737 0.66 +2.5
841,641 + Psyr_0737 0.66 -0.6
841,641 + Psyr_0737 0.66 +2.5
841,642 - Psyr_0737 0.66 -0.4
841,716 + Psyr_0737 0.84 -1.3
841,784 - +0.1
841,880 + +2.7
841,881 - +3.1
841,885 - +3.1
841,895 - +3.1
841,965 - +2.1
842,014 + -0.3
842,024 + +2.5
842,024 + -0.3
842,144 - -1.1

Or see this region's nucleotide sequence