Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0688

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0686 and Psyr_0687 are separated by 15 nucleotidesPsyr_0687 and Psyr_0688 are separated by 273 nucleotidesPsyr_0688 and Psyr_0689 are separated by 158 nucleotides Psyr_0686: Psyr_0686 - hypothetical protein, at 789,214 to 790,581 _0686 Psyr_0687: Psyr_0687 - conserved hypothetical protein, at 790,597 to 791,205 _0687 Psyr_0688: Psyr_0688 - transcriptional regulator, LysR family, at 791,479 to 792,426 _0688 Psyr_0689: Psyr_0689 - methylmalonate-semialdehyde dehydrogenase (acylating), at 792,585 to 794,111 _0689 Position (kb) 791 792 793Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 790.568 kb on + strandat 791.208 kb on + strandat 791.209 kb on - strandat 791.233 kb on + strandat 791.297 kb on + strandat 791.299 kb on + strandat 791.299 kb on + strandat 791.316 kb on + strandat 791.400 kb on + strandat 791.438 kb on + strandat 791.438 kb on + strandat 791.438 kb on + strandat 791.439 kb on - strandat 791.446 kb on + strandat 791.447 kb on - strandat 791.526 kb on + strandat 791.552 kb on + strandat 791.553 kb on - strandat 791.553 kb on - strandat 791.603 kb on + strand, within Psyr_0688at 791.603 kb on + strand, within Psyr_0688at 791.603 kb on + strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.724 kb on - strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.885 kb on + strand, within Psyr_0688at 791.901 kb on - strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.940 kb on - strandat 791.940 kb on - strand, within Psyr_0688at 791.940 kb on - strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.194 kb on + strand, within Psyr_0688at 792.195 kb on - strand, within Psyr_0688at 792.301 kb on + strand, within Psyr_0688at 792.311 kb on + strand, within Psyr_0688at 792.311 kb on + strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.629 kb on - strandat 792.812 kb on + strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.863 kb on + strand, within Psyr_0689at 792.864 kb on - strand, within Psyr_0689at 792.875 kb on - strand, within Psyr_0689at 792.921 kb on - strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.020 kb on - strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.387 kb on + strand, within Psyr_0689

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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790,568 + -1.9
791,208 + +0.8
791,209 - -5.2
791,233 + +2.8
791,297 + +1.7
791,299 + -1.4
791,299 + -2.9
791,316 + -1.0
791,400 + +0.1
791,438 + +2.1
791,438 + -0.6
791,438 + +1.1
791,439 - +4.0
791,446 + -0.5
791,447 - -0.9
791,526 + -0.0
791,552 + -1.7
791,553 - +2.0
791,553 - -1.9
791,603 + Psyr_0688 0.13 +0.5
791,603 + Psyr_0688 0.13 -2.0
791,603 + Psyr_0688 0.13 +2.5
791,604 - Psyr_0688 0.13 +1.1
791,604 - Psyr_0688 0.13 -1.3
791,604 - Psyr_0688 0.13 -1.9
791,604 - Psyr_0688 0.13 +3.1
791,604 - Psyr_0688 0.13 +0.1
791,604 - Psyr_0688 0.13 -1.9
791,724 - Psyr_0688 0.26 +0.7
791,786 + Psyr_0688 0.32 +0.0
791,786 + Psyr_0688 0.32 -1.3
791,786 + Psyr_0688 0.32 +4.6
791,786 + Psyr_0688 0.32 +1.7
791,786 + Psyr_0688 0.32 +3.6
791,786 + Psyr_0688 0.32 -0.7
791,786 + Psyr_0688 0.32 +1.1
791,786 + Psyr_0688 0.32 -1.3
791,786 + Psyr_0688 0.32 +1.7
791,787 - Psyr_0688 0.32 +0.7
791,787 - Psyr_0688 0.32 -0.7
791,787 - Psyr_0688 0.32 +2.5
791,787 - Psyr_0688 0.32 -1.0
791,787 - Psyr_0688 0.32 -1.9
791,787 - Psyr_0688 0.32 -2.6
791,787 - Psyr_0688 0.32 +1.1
791,787 - Psyr_0688 0.32 +0.1
791,787 - Psyr_0688 0.32 -2.6
791,787 - Psyr_0688 0.32 -0.5
791,787 - Psyr_0688 0.32 -0.1
791,822 + Psyr_0688 0.36 +1.1
791,822 + Psyr_0688 0.36 +0.1
791,822 + Psyr_0688 0.36 +0.5
791,822 + Psyr_0688 0.36 -1.4
791,823 - Psyr_0688 0.36 +0.5
791,823 - Psyr_0688 0.36 -0.9
791,823 - Psyr_0688 0.36 +2.1
791,885 + Psyr_0688 0.43 -2.6
791,901 - Psyr_0688 0.45 -1.7
791,939 + Psyr_0688 0.49 -1.7
791,939 + Psyr_0688 0.49 -1.6
791,939 + Psyr_0688 0.49 +1.7
791,939 + Psyr_0688 0.49 -1.3
791,939 + Psyr_0688 0.49 -1.7
791,940 - +0.1
791,940 - Psyr_0688 0.49 -0.2
791,940 - Psyr_0688 0.49 +1.1
792,001 + Psyr_0688 0.55 +3.1
792,001 + Psyr_0688 0.55 -0.2
792,001 + Psyr_0688 0.55 +2.7
792,001 + Psyr_0688 0.55 -1.9
792,001 + Psyr_0688 0.55 +4.0
792,002 - Psyr_0688 0.55 -4.2
792,002 - Psyr_0688 0.55 -2.9
792,002 - Psyr_0688 0.55 -0.3
792,002 - Psyr_0688 0.55 +0.1
792,194 + Psyr_0688 0.75 -0.9
792,195 - Psyr_0688 0.76 -0.1
792,301 + Psyr_0688 0.87 -0.1
792,311 + Psyr_0688 0.88 -1.5
792,311 + Psyr_0688 0.88 -1.0
792,312 - Psyr_0688 0.88 +3.7
792,312 - Psyr_0688 0.88 -2.9
792,312 - Psyr_0688 0.88 +0.7
792,312 - Psyr_0688 0.88 +1.1
792,472 + -1.1
792,472 + +1.1
792,472 + -1.0
792,472 + +1.7
792,472 + +3.0
792,472 + -0.2
792,473 - +1.1
792,473 - +3.3
792,473 - -1.3
792,473 - +2.5
792,473 - -0.7
792,629 - +1.7
792,812 + Psyr_0689 0.15 -2.0
792,813 - Psyr_0689 0.15 +0.6
792,813 - Psyr_0689 0.15 +4.5
792,813 - Psyr_0689 0.15 -0.6
792,813 - Psyr_0689 0.15 +3.5
792,863 + Psyr_0689 0.18 -0.2
792,864 - Psyr_0689 0.18 +0.5
792,875 - Psyr_0689 0.19 +0.9
792,921 - Psyr_0689 0.22 -3.0
793,017 + Psyr_0689 0.28 +1.1
793,017 + Psyr_0689 0.28 +3.0
793,017 + Psyr_0689 0.28 -1.3
793,017 + Psyr_0689 0.28 +4.1
793,017 + Psyr_0689 0.28 +3.5
793,017 + Psyr_0689 0.28 -2.9
793,017 + Psyr_0689 0.28 -1.1
793,017 + Psyr_0689 0.28 -0.7
793,017 + Psyr_0689 0.28 +0.9
793,018 - Psyr_0689 0.28 -0.6
793,018 - Psyr_0689 0.28 -1.0
793,018 - Psyr_0689 0.28 -1.2
793,018 - Psyr_0689 0.28 -0.4
793,018 - Psyr_0689 0.28 -1.1
793,018 - Psyr_0689 0.28 -1.2
793,018 - Psyr_0689 0.28 +3.1
793,018 - Psyr_0689 0.28 -2.3
793,018 - Psyr_0689 0.28 -1.3
793,018 - Psyr_0689 0.28 -1.0
793,018 - Psyr_0689 0.28 +1.7
793,018 - Psyr_0689 0.28 -0.9
793,018 - Psyr_0689 0.28 +0.1
793,018 - Psyr_0689 0.28 -0.4
793,018 - Psyr_0689 0.28 -1.6
793,018 - Psyr_0689 0.28 +1.1
793,018 - Psyr_0689 0.28 -3.0
793,020 - Psyr_0689 0.28 +0.1
793,121 + Psyr_0689 0.35 +3.8
793,121 + Psyr_0689 0.35 +0.1
793,121 + Psyr_0689 0.35 +0.8
793,121 + Psyr_0689 0.35 +1.1
793,121 + Psyr_0689 0.35 -0.2
793,121 + Psyr_0689 0.35 +2.7
793,121 + Psyr_0689 0.35 +3.3
793,121 + Psyr_0689 0.35 -2.3
793,122 - Psyr_0689 0.35 +0.7
793,122 - Psyr_0689 0.35 -1.5
793,122 - Psyr_0689 0.35 +0.2
793,122 - Psyr_0689 0.35 +1.8
793,122 - Psyr_0689 0.35 -1.6
793,122 - Psyr_0689 0.35 -0.7
793,122 - Psyr_0689 0.35 -0.1
793,122 - Psyr_0689 0.35 +0.9
793,317 + Psyr_0689 0.48 -0.9
793,317 + Psyr_0689 0.48 +0.3
793,387 + Psyr_0689 0.53 -1.3

Or see this region's nucleotide sequence