Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0669

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0668 and Psyr_0669 are separated by 111 nucleotidesPsyr_0669 and Psyr_0670 are separated by 123 nucleotides Psyr_0668: Psyr_0668 - Sodium/calcium exchanger membrane region, at 756,744 to 757,847 _0668 Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314 _0669 Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163 _0670 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 757.053 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.201 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.272 kb on + strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.323 kb on + strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.674 kb on + strand, within Psyr_0668at 757.674 kb on + strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.852 kb on + strandat 757.852 kb on + strandat 757.853 kb on - strandat 757.944 kb on + strandat 758.293 kb on + strand, within Psyr_0669at 758.293 kb on + strand, within Psyr_0669at 758.294 kb on - strand, within Psyr_0669at 758.294 kb on - strand, within Psyr_0669at 758.453 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.549 kb on - strand, within Psyr_0669at 758.743 kb on + strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.932 kb on + strand, within Psyr_0669at 758.933 kb on - strand, within Psyr_0669at 758.933 kb on - strand, within Psyr_0669at 759.106 kb on + strand, within Psyr_0669at 759.107 kb on - strand, within Psyr_0669at 759.107 kb on - strand, within Psyr_0669at 759.300 kb on - strandat 759.300 kb on - strandat 759.398 kb on - strandat 759.496 kb on + strandat 759.639 kb on - strand, within Psyr_0670at 759.639 kb on - strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.676 kb on + strand, within Psyr_0670at 759.677 kb on - strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.020 kb on + strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.021 kb on - strand, within Psyr_0670at 760.119 kb on - strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.207 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.258 kb on + strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.259 kb on - strandat 760.287 kb on + strandat 760.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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757,053 + Psyr_0668 0.28 -0.9
757,134 + Psyr_0668 0.35 +3.0
757,134 + Psyr_0668 0.35 +0.0
757,135 - Psyr_0668 0.35 -0.2
757,135 - Psyr_0668 0.35 -1.1
757,135 - Psyr_0668 0.35 +1.7
757,135 - Psyr_0668 0.35 +0.5
757,135 - Psyr_0668 0.35 -0.5
757,158 + Psyr_0668 0.38 +0.2
757,158 + Psyr_0668 0.38 -1.4
757,158 + Psyr_0668 0.38 -1.1
757,158 + Psyr_0668 0.38 +0.1
757,158 + Psyr_0668 0.38 +3.3
757,159 - Psyr_0668 0.38 +2.1
757,159 - Psyr_0668 0.38 +2.1
757,159 - Psyr_0668 0.38 -1.3
757,201 + Psyr_0668 0.41 -1.4
757,236 + Psyr_0668 0.45 +0.5
757,236 + Psyr_0668 0.45 +2.1
757,272 + Psyr_0668 0.48 -0.6
757,273 - Psyr_0668 0.48 +3.1
757,273 - Psyr_0668 0.48 +1.7
757,273 - Psyr_0668 0.48 +4.0
757,273 - Psyr_0668 0.48 +2.7
757,273 - Psyr_0668 0.48 +3.8
757,311 + Psyr_0668 0.51 +1.6
757,311 + Psyr_0668 0.51 -1.3
757,311 + Psyr_0668 0.51 -0.4
757,323 + Psyr_0668 0.52 +3.0
757,324 - Psyr_0668 0.53 -0.6
757,324 - Psyr_0668 0.53 +4.0
757,324 - Psyr_0668 0.53 +3.1
757,674 + Psyr_0668 0.84 +1.1
757,674 + Psyr_0668 0.84 -0.9
757,675 - Psyr_0668 0.84 -2.0
757,675 - Psyr_0668 0.84 -2.1
757,675 - Psyr_0668 0.84 +3.1
757,852 + -0.6
757,852 + -1.2
757,853 - -3.3
757,944 + +0.8
758,293 + Psyr_0669 0.25 +2.5
758,293 + Psyr_0669 0.25 +4.1
758,294 - Psyr_0669 0.25 +3.6
758,294 - Psyr_0669 0.25 -1.4
758,453 + Psyr_0669 0.36 +3.0
758,535 + Psyr_0669 0.42 +1.0
758,535 + Psyr_0669 0.42 -0.7
758,535 + Psyr_0669 0.42 -0.1
758,535 + Psyr_0669 0.42 -3.6
758,535 + Psyr_0669 0.42 +3.6
758,535 + Psyr_0669 0.42 +3.6
758,535 + Psyr_0669 0.42 -1.9
758,535 + Psyr_0669 0.42 -1.9
758,536 - Psyr_0669 0.43 +0.6
758,536 - Psyr_0669 0.43 +4.7
758,536 - Psyr_0669 0.43 +0.2
758,536 - Psyr_0669 0.43 +0.7
758,548 + Psyr_0669 0.43 -0.1
758,548 + Psyr_0669 0.43 -3.2
758,548 + Psyr_0669 0.43 -1.1
758,548 + Psyr_0669 0.43 +0.3
758,549 - Psyr_0669 0.44 +0.3
758,743 + Psyr_0669 0.58 -0.9
758,744 - Psyr_0669 0.58 -0.7
758,744 - Psyr_0669 0.58 -1.4
758,744 - Psyr_0669 0.58 +1.1
758,744 - Psyr_0669 0.58 +0.5
758,744 - Psyr_0669 0.58 +0.3
758,932 + Psyr_0669 0.72 +0.5
758,932 + Psyr_0669 0.72 +1.3
758,932 + Psyr_0669 0.72 +0.4
758,932 + Psyr_0669 0.72 -4.9
758,932 + Psyr_0669 0.72 -1.4
758,932 + Psyr_0669 0.72 -1.0
758,932 + Psyr_0669 0.72 -1.6
758,933 - Psyr_0669 0.72 -1.2
758,933 - Psyr_0669 0.72 +1.1
759,106 + Psyr_0669 0.85 -0.2
759,107 - Psyr_0669 0.85 -0.3
759,107 - Psyr_0669 0.85 +4.2
759,300 - -0.1
759,300 - -0.5
759,398 - +1.7
759,496 + -0.9
759,639 - Psyr_0670 0.28 -2.9
759,639 - Psyr_0670 0.28 -2.3
759,676 + Psyr_0670 0.33 +4.0
759,676 + Psyr_0670 0.33 +1.6
759,676 + Psyr_0670 0.33 -0.0
759,676 + Psyr_0670 0.33 +1.1
759,677 - Psyr_0670 0.33 +2.1
760,020 + Psyr_0670 0.80 +0.4
760,020 + Psyr_0670 0.80 -0.9
760,021 - Psyr_0670 0.80 +4.1
760,021 - Psyr_0670 0.80 +2.5
760,021 - Psyr_0670 0.80 -1.4
760,119 - -1.6
760,207 + +2.7
760,207 + -1.5
760,207 + -2.2
760,258 + +1.7
760,258 + +4.0
760,258 + -1.2
760,258 + -1.3
760,258 + -0.2
760,258 + -1.0
760,258 + -1.0
760,258 + -0.3
760,259 - -5.5
760,259 - +0.3
760,259 - -1.2
760,287 + +0.7
760,297 + -1.9

Or see this region's nucleotide sequence