Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0667

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0665 and Psyr_0666 overlap by 4 nucleotidesPsyr_0666 and Psyr_0667 are separated by 0 nucleotidesPsyr_0667 and Psyr_0668 are separated by 264 nucleotides Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572 _0665 Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558 _0666 Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479 _0667 Psyr_0668: Psyr_0668 - Sodium/calcium exchanger membrane region, at 756,744 to 757,847 _0668 Position (kb) 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 754.572 kb on + strandat 754.588 kb on - strandat 754.842 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.408 kb on - strand, within Psyr_0666at 755.561 kb on - strandat 755.684 kb on + strand, within Psyr_0667at 755.881 kb on + strand, within Psyr_0667at 755.881 kb on + strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 756.067 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.191 kb on + strand, within Psyr_0667at 756.192 kb on - strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.495 kb on + strandat 756.496 kb on - strandat 756.496 kb on - strandat 756.614 kb on + strandat 756.647 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 757.053 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.201 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.272 kb on + strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.323 kb on + strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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754,572 + +0.1
754,588 - -1.1
754,842 + Psyr_0666 0.28 -0.0
755,407 + Psyr_0666 0.85 +3.1
755,407 + Psyr_0666 0.85 -0.2
755,407 + Psyr_0666 0.85 +0.8
755,407 + Psyr_0666 0.85 +1.1
755,407 + Psyr_0666 0.85 +3.0
755,407 + Psyr_0666 0.85 +3.1
755,408 - Psyr_0666 0.85 -1.4
755,561 - +3.1
755,684 + Psyr_0667 0.14 +0.2
755,881 + Psyr_0667 0.35 +2.7
755,881 + Psyr_0667 0.35 +2.1
755,882 - Psyr_0667 0.35 +0.1
755,882 - Psyr_0667 0.35 +4.6
755,882 - Psyr_0667 0.35 +1.1
755,882 - Psyr_0667 0.35 +3.6
756,067 + Psyr_0667 0.55 +1.7
756,124 + Psyr_0667 0.61 +0.6
756,124 + Psyr_0667 0.61 -0.6
756,124 + Psyr_0667 0.61 +1.7
756,124 + Psyr_0667 0.61 -1.1
756,125 - Psyr_0667 0.61 +4.5
756,125 - Psyr_0667 0.61 +3.0
756,189 + Psyr_0667 0.68 +2.1
756,189 + Psyr_0667 0.68 +0.1
756,189 + Psyr_0667 0.68 +0.5
756,189 + Psyr_0667 0.68 -0.5
756,189 + Psyr_0667 0.68 +3.0
756,189 + Psyr_0667 0.68 +0.4
756,189 + Psyr_0667 0.68 +2.7
756,189 + Psyr_0667 0.68 -1.0
756,189 + Psyr_0667 0.68 -0.4
756,189 + Psyr_0667 0.68 +3.3
756,189 + Psyr_0667 0.68 -1.6
756,189 + Psyr_0667 0.68 -0.7
756,189 + Psyr_0667 0.68 -0.2
756,189 + Psyr_0667 0.68 +2.5
756,189 + Psyr_0667 0.68 +0.4
756,190 - Psyr_0667 0.69 -0.6
756,190 - Psyr_0667 0.69 -1.3
756,190 - Psyr_0667 0.69 +2.1
756,190 - Psyr_0667 0.69 -1.1
756,190 - Psyr_0667 0.69 +0.3
756,190 - Psyr_0667 0.69 -0.4
756,190 - Psyr_0667 0.69 -3.1
756,190 - Psyr_0667 0.69 +2.6
756,190 - Psyr_0667 0.69 -0.6
756,190 - Psyr_0667 0.69 -2.3
756,190 - Psyr_0667 0.69 +1.3
756,190 - Psyr_0667 0.69 -0.9
756,190 - Psyr_0667 0.69 +0.4
756,190 - Psyr_0667 0.69 -2.2
756,191 + Psyr_0667 0.69 +3.7
756,192 - Psyr_0667 0.69 -2.2
756,213 + Psyr_0667 0.71 -0.3
756,213 + Psyr_0667 0.71 +3.1
756,214 - Psyr_0667 0.71 +3.0
756,214 - Psyr_0667 0.71 +2.5
756,214 - Psyr_0667 0.71 +3.6
756,214 - Psyr_0667 0.71 +0.1
756,495 + -2.4
756,496 - +4.0
756,496 - -1.5
756,614 + -1.0
756,647 + +3.1
756,706 + -1.2
756,706 + -0.3
756,706 + -0.2
756,706 + +1.0
756,706 + -1.6
756,706 + -0.6
756,706 + +2.7
756,706 + +0.1
756,706 + +2.1
756,706 + +1.7
756,706 + +1.1
756,706 + -2.1
756,706 + +3.1
756,706 + +1.0
756,706 + -2.1
756,707 - -0.8
756,707 - +3.6
756,707 - +2.5
756,707 - +3.8
756,707 - -0.9
757,053 + Psyr_0668 0.28 -0.9
757,134 + Psyr_0668 0.35 +3.0
757,134 + Psyr_0668 0.35 +0.0
757,135 - Psyr_0668 0.35 -0.2
757,135 - Psyr_0668 0.35 -1.1
757,135 - Psyr_0668 0.35 +1.7
757,135 - Psyr_0668 0.35 +0.5
757,135 - Psyr_0668 0.35 -0.5
757,158 + Psyr_0668 0.38 +0.2
757,158 + Psyr_0668 0.38 -1.4
757,158 + Psyr_0668 0.38 -1.1
757,158 + Psyr_0668 0.38 +0.1
757,158 + Psyr_0668 0.38 +3.3
757,159 - Psyr_0668 0.38 +2.1
757,159 - Psyr_0668 0.38 +2.1
757,159 - Psyr_0668 0.38 -1.3
757,201 + Psyr_0668 0.41 -1.4
757,236 + Psyr_0668 0.45 +0.5
757,236 + Psyr_0668 0.45 +2.1
757,272 + Psyr_0668 0.48 -0.6
757,273 - Psyr_0668 0.48 +3.1
757,273 - Psyr_0668 0.48 +1.7
757,273 - Psyr_0668 0.48 +4.0
757,273 - Psyr_0668 0.48 +2.7
757,273 - Psyr_0668 0.48 +3.8
757,311 + Psyr_0668 0.51 +1.6
757,311 + Psyr_0668 0.51 -1.3
757,311 + Psyr_0668 0.51 -0.4
757,323 + Psyr_0668 0.52 +3.0
757,324 - Psyr_0668 0.53 -0.6
757,324 - Psyr_0668 0.53 +4.0
757,324 - Psyr_0668 0.53 +3.1

Or see this region's nucleotide sequence