Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0657 and Psyr_0658 are separated by 60 nucleotides Psyr_0658 and Psyr_0659 are separated by 116 nucleotides
Psyr_0657: Psyr_0657 - Drug resistance transporter Bcr/CflA subfamily, at 744,766 to 745,962
_0657
Psyr_0658: Psyr_0658 - Zinc-containing alcohol dehydrogenase superfamily, at 746,023 to 747,036
_0658
Psyr_0659: Psyr_0659 - transcriptional regulator, LysR family, at 747,153 to 748,076
_0659
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 745.224 kb on + strand, within Psyr_0657 at 745.225 kb on - strand, within Psyr_0657 at 745.225 kb on - strand, within Psyr_0657 at 745.438 kb on + strand, within Psyr_0657 at 745.438 kb on + strand, within Psyr_0657 at 745.439 kb on - strand, within Psyr_0657 at 745.439 kb on - strand, within Psyr_0657 at 745.439 kb on - strand, within Psyr_0657 at 745.439 kb on - strand, within Psyr_0657 at 745.474 kb on + strand, within Psyr_0657 at 745.474 kb on + strand, within Psyr_0657 at 745.474 kb on + strand, within Psyr_0657 at 745.475 kb on - strand, within Psyr_0657 at 745.475 kb on - strand, within Psyr_0657 at 745.495 kb on + strand, within Psyr_0657 at 745.496 kb on - strand, within Psyr_0657 at 745.557 kb on + strand, within Psyr_0657 at 745.558 kb on - strand, within Psyr_0657 at 745.558 kb on - strand, within Psyr_0657 at 745.609 kb on + strand, within Psyr_0657 at 746.039 kb on - strand at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.912 kb on - strand, within Psyr_0658 at 747.018 kb on - strand at 747.018 kb on - strand at 747.020 kb on + strand at 747.020 kb on + strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.142 kb on - strand at 747.185 kb on - strand at 747.185 kb on - strand at 747.270 kb on - strand, within Psyr_0659 at 747.542 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.992 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 745,224 + Psyr_0657 0.38 -0.5 745,225 - Psyr_0657 0.38 +0.9 745,225 - Psyr_0657 0.38 +1.1 745,438 + Psyr_0657 0.56 +0.6 745,438 + Psyr_0657 0.56 -0.4 745,439 - Psyr_0657 0.56 +3.3 745,439 - Psyr_0657 0.56 +2.7 745,439 - Psyr_0657 0.56 -0.5 745,439 - Psyr_0657 0.56 +1.7 745,474 + Psyr_0657 0.59 +0.1 745,474 + Psyr_0657 0.59 +0.5 745,474 + Psyr_0657 0.59 +4.0 745,475 - Psyr_0657 0.59 -1.9 745,475 - Psyr_0657 0.59 +0.0 745,495 + Psyr_0657 0.61 +0.0 745,496 - Psyr_0657 0.61 -0.5 745,557 + Psyr_0657 0.66 +0.5 745,558 - Psyr_0657 0.66 -1.5 745,558 - Psyr_0657 0.66 +3.6 745,609 + Psyr_0657 0.70 -1.9 746,039 - -3.2 746,225 + Psyr_0658 0.20 +3.7 746,225 + Psyr_0658 0.20 +1.7 746,225 + Psyr_0658 0.20 +1.6 746,225 + Psyr_0658 0.20 +2.0 746,225 + Psyr_0658 0.20 -3.5 746,225 + Psyr_0658 0.20 -1.4 746,226 - Psyr_0658 0.20 -1.8 746,226 - Psyr_0658 0.20 -0.3 746,226 - Psyr_0658 0.20 -2.2 746,226 - Psyr_0658 0.20 -0.5 746,226 - Psyr_0658 0.20 -2.7 746,226 - Psyr_0658 0.20 +0.1 746,226 - Psyr_0658 0.20 +1.5 746,771 + Psyr_0658 0.74 -1.8 746,771 + Psyr_0658 0.74 -1.5 746,771 + Psyr_0658 0.74 +4.2 746,771 + Psyr_0658 0.74 -1.9 746,772 - Psyr_0658 0.74 +2.5 746,772 - Psyr_0658 0.74 +0.9 746,772 - Psyr_0658 0.74 +0.3 746,772 - Psyr_0658 0.74 -2.3 746,772 - Psyr_0658 0.74 -1.8 746,912 - Psyr_0658 0.88 +0.1 747,018 - +1.7 747,018 - +3.1 747,020 + -2.0 747,020 + +3.0 747,021 - -1.5 747,021 - +2.5 747,021 - -0.8 747,021 - +2.6 747,142 - +0.0 747,185 - +4.8 747,185 - -0.6 747,270 - Psyr_0659 0.13 -2.1 747,542 + Psyr_0659 0.42 +3.0 747,666 + Psyr_0659 0.56 -0.4 747,666 + Psyr_0659 0.56 +0.4 747,666 + Psyr_0659 0.56 -0.5 747,716 + Psyr_0659 0.61 +2.1 747,716 + Psyr_0659 0.61 +1.5 747,717 - Psyr_0659 0.61 +4.4 747,717 - Psyr_0659 0.61 +1.0 747,871 - Psyr_0659 0.78 +1.4 747,871 - Psyr_0659 0.78 -0.7 747,871 - Psyr_0659 0.78 +0.1 747,992 + +0.1 748,034 + -1.4 748,034 + -1.2 748,034 + +2.5 748,035 - +0.1 748,035 - -0.5 748,035 - -1.9 748,035 - -0.8 748,035 - -0.9 748,035 - -1.3 748,035 - +4.0
Or see this region's nucleotide sequence