Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0645

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0644 and Psyr_0645 are separated by 108 nucleotidesPsyr_0645 and Psyr_0646 are separated by 185 nucleotidesPsyr_0646 and Psyr_0647 are separated by 32 nucleotides Psyr_0644: Psyr_0644 - Short-chain dehydrogenase/reductase SDR, at 731,340 to 732,695 _0644 Psyr_0645: Psyr_0645 - 3-ketoacyl-CoA thiolase, at 732,804 to 734,081 _0645 Psyr_0646: Psyr_0646 - conserved hypothetical protein, at 734,267 to 734,545 _0646 Psyr_0647: Psyr_0647 - Protein of unknown function DUF726, at 734,578 to 735,975 _0647 Position (kb) 732 733 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.892 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.677 kb on + strandat 732.678 kb on - strandat 732.679 kb on + strandat 732.679 kb on + strandat 732.680 kb on - strandat 732.680 kb on - strandat 732.680 kb on - strandat 732.680 kb on - strandat 733.057 kb on - strand, within Psyr_0645at 733.057 kb on - strand, within Psyr_0645at 733.219 kb on + strand, within Psyr_0645at 733.219 kb on + strand, within Psyr_0645at 733.370 kb on - strand, within Psyr_0645at 733.370 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645at 733.791 kb on + strand, within Psyr_0645at 733.829 kb on + strand, within Psyr_0645at 734.104 kb on + strandat 734.104 kb on + strandat 734.104 kb on + strandat 734.105 kb on - strandat 734.120 kb on + strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.148 kb on + strandat 734.160 kb on - strandat 734.240 kb on + strandat 734.241 kb on - strandat 734.261 kb on + strandat 734.261 kb on + strandat 734.262 kb on - strandat 734.262 kb on - strandat 734.278 kb on + strandat 734.292 kb on + strandat 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.511 kb on + strand, within Psyr_0646at 734.698 kb on - strandat 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.051 kb on - strand, within Psyr_0647

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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731,832 + Psyr_0644 0.36 +1.4
731,832 + Psyr_0644 0.36 -1.4
731,832 + Psyr_0644 0.36 +1.1
731,832 + Psyr_0644 0.36 -3.7
731,832 + Psyr_0644 0.36 -0.6
731,832 + Psyr_0644 0.36 +4.1
731,832 + Psyr_0644 0.36 -1.2
731,832 + Psyr_0644 0.36 +2.1
731,833 - Psyr_0644 0.36 +3.6
731,833 - Psyr_0644 0.36 -1.2
731,833 - Psyr_0644 0.36 -1.1
731,833 - Psyr_0644 0.36 -1.9
731,833 - Psyr_0644 0.36 -2.4
731,833 - Psyr_0644 0.36 +2.9
731,892 - Psyr_0644 0.41 -1.6
731,959 - Psyr_0644 0.46 +2.5
731,959 - Psyr_0644 0.46 +1.7
731,959 - Psyr_0644 0.46 -1.4
732,494 - Psyr_0644 0.85 -1.1
732,494 - Psyr_0644 0.85 -1.7
732,494 - Psyr_0644 0.85 -0.8
732,494 - Psyr_0644 0.85 -1.5
732,677 + +4.5
732,678 - +0.7
732,679 + -3.3
732,679 + +1.7
732,680 - +2.7
732,680 - +2.5
732,680 - +1.1
732,680 - -0.9
733,057 - Psyr_0645 0.20 +4.5
733,057 - Psyr_0645 0.20 -0.9
733,219 + Psyr_0645 0.32 +0.2
733,219 + Psyr_0645 0.32 +1.7
733,370 - Psyr_0645 0.44 -0.6
733,370 - Psyr_0645 0.44 +3.9
733,465 - Psyr_0645 0.52 -3.0
733,465 - Psyr_0645 0.52 +0.6
733,791 + Psyr_0645 0.77 +0.4
733,829 + Psyr_0645 0.80 +4.1
734,104 + -0.9
734,104 + -0.9
734,104 + -1.9
734,105 - +4.0
734,120 + -0.7
734,121 - +3.7
734,121 - +1.1
734,121 - -1.4
734,148 + +3.6
734,160 - -0.2
734,240 + +0.0
734,241 - +4.1
734,261 + +0.8
734,261 + -1.2
734,262 - +3.5
734,262 - -1.4
734,278 + +1.7
734,292 + -0.4
734,321 + Psyr_0646 0.19 +1.7
734,321 + Psyr_0646 0.19 +2.1
734,321 + Psyr_0646 0.19 +1.9
734,321 + Psyr_0646 0.19 +2.5
734,321 + Psyr_0646 0.19 -0.7
734,321 + Psyr_0646 0.19 +3.5
734,322 - Psyr_0646 0.20 -2.0
734,322 - Psyr_0646 0.20 +0.6
734,322 - Psyr_0646 0.20 +2.9
734,322 - Psyr_0646 0.20 +0.1
734,322 - Psyr_0646 0.20 +2.7
734,322 - Psyr_0646 0.20 -0.8
734,322 - Psyr_0646 0.20 +4.2
734,363 + Psyr_0646 0.34 +2.7
734,363 + Psyr_0646 0.34 +0.5
734,363 + Psyr_0646 0.34 -0.6
734,363 + Psyr_0646 0.34 -0.6
734,363 + Psyr_0646 0.34 +3.6
734,363 + Psyr_0646 0.34 +3.3
734,363 + Psyr_0646 0.34 -0.6
734,363 + Psyr_0646 0.34 -0.4
734,363 + Psyr_0646 0.34 -2.1
734,363 + Psyr_0646 0.34 -1.8
734,364 - Psyr_0646 0.35 -1.4
734,364 - Psyr_0646 0.35 -1.7
734,364 - Psyr_0646 0.35 +0.2
734,364 - Psyr_0646 0.35 +2.7
734,364 - Psyr_0646 0.35 +1.0
734,364 - Psyr_0646 0.35 -1.0
734,364 - Psyr_0646 0.35 +4.3
734,364 - Psyr_0646 0.35 -0.6
734,365 + Psyr_0646 0.35 +1.1
734,365 + Psyr_0646 0.35 -2.0
734,366 - Psyr_0646 0.35 -2.9
734,366 - Psyr_0646 0.35 -1.1
734,436 + Psyr_0646 0.61 +4.2
734,436 + Psyr_0646 0.61 +0.1
734,437 - Psyr_0646 0.61 +1.1
734,437 - Psyr_0646 0.61 -2.0
734,444 + Psyr_0646 0.63 +2.5
734,444 + Psyr_0646 0.63 -1.6
734,445 - Psyr_0646 0.64 +1.7
734,445 - Psyr_0646 0.64 +0.6
734,445 - Psyr_0646 0.64 +1.1
734,445 - Psyr_0646 0.64 -1.2
734,445 - Psyr_0646 0.64 +3.5
734,445 - Psyr_0646 0.64 -0.5
734,511 + Psyr_0646 0.87 +5.0
734,698 - -0.9
735,050 + Psyr_0647 0.34 +1.1
735,050 + Psyr_0647 0.34 +0.2
735,050 + Psyr_0647 0.34 +1.7
735,050 + Psyr_0647 0.34 -0.4
735,050 + Psyr_0647 0.34 -0.7
735,050 + Psyr_0647 0.34 -0.2
735,051 - Psyr_0647 0.34 -1.5

Or see this region's nucleotide sequence