Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0637

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0635 and Psyr_0636 are separated by 203 nucleotidesPsyr_0636 and Psyr_0637 overlap by 4 nucleotidesPsyr_0637 and Psyr_0638 are separated by 14 nucleotidesPsyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0635: Psyr_0635 - MaoC-like dehydratase, at 725,613 to 726,068 _0635 Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634 _0636 Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347 _0637 Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952 _0638 Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603 _0639 Position (kb) 726 727 728Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 725.632 kb on - strandat 725.803 kb on + strand, within Psyr_0635at 725.803 kb on + strand, within Psyr_0635at 725.835 kb on + strand, within Psyr_0635at 725.836 kb on - strand, within Psyr_0635at 725.836 kb on - strand, within Psyr_0635at 725.981 kb on + strand, within Psyr_0635at 726.034 kb on + strandat 726.034 kb on + strandat 726.034 kb on + strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.035 kb on - strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.068 kb on + strandat 726.069 kb on - strandat 726.069 kb on - strandat 726.069 kb on - strandat 726.095 kb on + strandat 726.095 kb on + strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.096 kb on - strandat 726.223 kb on + strandat 726.223 kb on + strandat 726.223 kb on + strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.224 kb on - strandat 726.225 kb on + strandat 726.225 kb on + strandat 726.225 kb on + strandat 726.226 kb on - strandat 726.226 kb on - strandat 726.226 kb on - strandat 726.255 kb on + strandat 726.255 kb on + strandat 726.255 kb on + strandat 726.383 kb on - strand, within Psyr_0636at 726.383 kb on - strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.389 kb on + strand, within Psyr_0636at 726.390 kb on - strand, within Psyr_0636at 726.390 kb on - strand, within Psyr_0636at 726.498 kb on - strand, within Psyr_0636at 726.498 kb on - strand, within Psyr_0636at 726.498 kb on - strandat 726.498 kb on - strand, within Psyr_0636at 726.710 kb on - strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.817 kb on + strand, within Psyr_0637at 726.895 kb on + strand, within Psyr_0637at 726.896 kb on - strand, within Psyr_0637at 726.903 kb on + strand, within Psyr_0637at 726.903 kb on + strand, within Psyr_0637at 727.131 kb on - strand, within Psyr_0637at 727.345 kb on + strandat 727.346 kb on - strandat 727.362 kb on - strandat 727.496 kb on + strand, within Psyr_0638at 727.497 kb on - strand, within Psyr_0638at 727.809 kb on + strand, within Psyr_0638at 727.834 kb on - strand, within Psyr_0638at 727.982 kb on + strandat 728.180 kb on + strand, within Psyr_0639at 728.180 kb on + strand, within Psyr_0639at 728.180 kb on + strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.181 kb on - strand, within Psyr_0639at 728.206 kb on + strand, within Psyr_0639at 728.206 kb on + strand, within Psyr_0639at 728.206 kb on - strand, within Psyr_0639at 728.207 kb on - strand, within Psyr_0639at 728.207 kb on - strand, within Psyr_0639at 728.284 kb on + strand, within Psyr_0639at 728.284 kb on + strand, within Psyr_0639at 728.285 kb on - strand, within Psyr_0639

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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725,632 - +4.3
725,803 + Psyr_0635 0.42 -2.7
725,803 + Psyr_0635 0.42 +1.1
725,835 + Psyr_0635 0.49 -2.7
725,836 - Psyr_0635 0.49 -1.4
725,836 - Psyr_0635 0.49 -3.4
725,981 + Psyr_0635 0.81 +3.0
726,034 + -3.3
726,034 + -4.2
726,034 + -0.6
726,035 - +0.2
726,035 - -2.4
726,035 - +4.1
726,035 - -2.0
726,035 - -1.6
726,068 + -1.2
726,068 + +2.1
726,068 + -1.7
726,068 + +2.1
726,068 + +0.1
726,069 - -1.4
726,069 - -1.1
726,069 - +0.1
726,095 + -1.6
726,095 + +0.1
726,096 - +0.4
726,096 - -0.5
726,096 - -0.3
726,096 - -1.2
726,223 + -3.4
726,223 + -0.1
726,223 + +0.1
726,224 - +0.3
726,224 - +3.7
726,224 - -1.4
726,224 - +3.5
726,224 - -0.8
726,224 - -0.5
726,225 + +1.7
726,225 + -2.4
726,225 + -0.8
726,226 - -1.7
726,226 - -2.7
726,226 - +0.5
726,255 + -0.6
726,255 + -0.9
726,255 + +1.1
726,383 - Psyr_0636 0.31 +4.0
726,383 - Psyr_0636 0.31 +0.4
726,389 + Psyr_0636 0.32 -0.4
726,389 + Psyr_0636 0.32 +1.1
726,389 + Psyr_0636 0.32 -0.9
726,389 + Psyr_0636 0.32 +0.9
726,389 + Psyr_0636 0.32 -1.7
726,389 + Psyr_0636 0.32 -2.2
726,390 - Psyr_0636 0.33 +0.6
726,390 - Psyr_0636 0.33 -0.3
726,498 - Psyr_0636 0.62 +3.6
726,498 - Psyr_0636 0.62 -2.1
726,498 - +0.1
726,498 - Psyr_0636 0.62 +0.5
726,710 - Psyr_0637 0.11 +3.7
726,817 + Psyr_0637 0.26 -2.4
726,817 + Psyr_0637 0.26 +2.5
726,817 + Psyr_0637 0.26 +2.7
726,817 + Psyr_0637 0.26 -1.2
726,817 + Psyr_0637 0.26 -4.4
726,895 + Psyr_0637 0.37 -0.5
726,896 - Psyr_0637 0.37 -1.1
726,903 + Psyr_0637 0.38 -0.2
726,903 + Psyr_0637 0.38 -0.3
727,131 - Psyr_0637 0.70 -2.5
727,345 + +1.1
727,346 - +2.5
727,362 - +1.1
727,496 + Psyr_0638 0.23 -0.2
727,497 - Psyr_0638 0.23 -2.2
727,809 + Psyr_0638 0.76 -0.4
727,834 - Psyr_0638 0.80 -2.3
727,982 + -2.6
728,180 + Psyr_0639 0.25 -3.1
728,180 + Psyr_0639 0.25 +0.1
728,180 + Psyr_0639 0.25 -1.1
728,181 - Psyr_0639 0.25 +0.3
728,181 - Psyr_0639 0.25 +0.2
728,181 - Psyr_0639 0.25 +1.7
728,206 + Psyr_0639 0.30 -0.8
728,206 + Psyr_0639 0.30 +1.6
728,206 - Psyr_0639 0.30 -1.6
728,207 - Psyr_0639 0.30 +3.5
728,207 - Psyr_0639 0.30 -2.7
728,284 + Psyr_0639 0.44 -3.1
728,284 + Psyr_0639 0.44 +0.5
728,285 - Psyr_0639 0.44 +3.3

Or see this region's nucleotide sequence