Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0589 and Psyr_0590 overlap by 1 nucleotides Psyr_0590 and Psyr_0591 are separated by 152 nucleotides Psyr_0591 and Psyr_0592 are separated by 77 nucleotides
Psyr_0589: Psyr_0589 - protein of unknown function DUF403:Protein of unknown function DUF404:Protein of unknown function DUF407, at 676,492 to 678,987
_0589
Psyr_0590: Psyr_0590 - Transglutaminase-like protein, at 678,987 to 679,880
_0590
Psyr_0591: Psyr_0591 - Blue (type 1) copper domain protein, at 680,033 to 680,479
_0591
Psyr_0592: Psyr_0592 - Integrase, catalytic region, at 680,557 to 681,393
_0592
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 677.989 kb on + strand, within Psyr_0589 at 678.013 kb on + strand, within Psyr_0589 at 678.014 kb on - strand, within Psyr_0589 at 678.112 kb on + strand, within Psyr_0589 at 678.113 kb on - strand, within Psyr_0589 at 678.113 kb on - strand, within Psyr_0589 at 678.312 kb on - strand, within Psyr_0589 at 678.619 kb on + strand, within Psyr_0589 at 678.619 kb on + strand, within Psyr_0589 at 678.619 kb on + strand, within Psyr_0589 at 678.631 kb on + strand, within Psyr_0589 at 678.631 kb on + strand, within Psyr_0589 at 678.632 kb on - strand, within Psyr_0589 at 678.632 kb on - strand, within Psyr_0589 at 678.774 kb on + strand at 678.774 kb on + strand at 678.774 kb on + strand at 678.775 kb on - strand at 679.000 kb on - strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.023 kb on + strand at 679.024 kb on - strand at 679.029 kb on + strand at 679.029 kb on + strand at 679.030 kb on - strand at 679.030 kb on - strand at 679.030 kb on - strand at 679.030 kb on - strand at 679.030 kb on - strand at 679.030 kb on - strand at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.308 kb on + strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.309 kb on - strand, within Psyr_0590 at 679.447 kb on + strand, within Psyr_0590 at 679.448 kb on - strand, within Psyr_0590 at 679.611 kb on + strand, within Psyr_0590 at 679.612 kb on - strand, within Psyr_0590 at 679.696 kb on + strand, within Psyr_0590 at 679.697 kb on - strand, within Psyr_0590 at 679.878 kb on + strand at 679.878 kb on + strand at 679.882 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.990 kb on + strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 679.991 kb on - strand at 680.001 kb on + strand at 680.001 kb on + strand at 680.002 kb on - strand at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.135 kb on + strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.136 kb on - strand, within Psyr_0591 at 680.230 kb on + strand, within Psyr_0591 at 680.231 kb on - strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.306 kb on + strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.307 kb on - strand, within Psyr_0591 at 680.414 kb on + strand, within Psyr_0591 at 680.415 kb on - strand, within Psyr_0591 at 680.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 677,989 + Psyr_0589 0.60 -1.4 678,013 + Psyr_0589 0.61 -2.3 678,014 - Psyr_0589 0.61 -0.5 678,112 + Psyr_0589 0.65 +0.1 678,113 - Psyr_0589 0.65 +3.1 678,113 - Psyr_0589 0.65 +0.1 678,312 - Psyr_0589 0.73 +2.9 678,619 + Psyr_0589 0.85 -0.0 678,619 + Psyr_0589 0.85 -1.5 678,619 + Psyr_0589 0.85 +3.6 678,631 + Psyr_0589 0.86 +1.7 678,631 + Psyr_0589 0.86 +0.3 678,632 - Psyr_0589 0.86 -2.0 678,632 - Psyr_0589 0.86 +1.7 678,774 + -1.6 678,774 + +0.9 678,774 + -0.4 678,775 - +4.3 679,000 - +3.6 679,023 + +1.1 679,023 + -1.0 679,023 + -0.4 679,023 + +0.9 679,023 + -0.7 679,023 + +2.5 679,023 + -1.2 679,024 - +3.8 679,029 + +0.3 679,029 + -1.1 679,030 - -2.1 679,030 - -1.0 679,030 - +0.3 679,030 - +2.7 679,030 - +0.7 679,030 - +2.1 679,308 + Psyr_0590 0.36 +3.7 679,308 + Psyr_0590 0.36 +0.1 679,308 + Psyr_0590 0.36 -2.9 679,308 + Psyr_0590 0.36 -2.2 679,308 + Psyr_0590 0.36 +1.1 679,308 + Psyr_0590 0.36 +0.3 679,309 - Psyr_0590 0.36 -0.6 679,309 - Psyr_0590 0.36 +3.7 679,447 + Psyr_0590 0.51 -1.2 679,448 - Psyr_0590 0.52 +0.1 679,611 + Psyr_0590 0.70 +2.5 679,612 - Psyr_0590 0.70 -2.1 679,696 + Psyr_0590 0.79 +2.5 679,697 - Psyr_0590 0.79 -0.2 679,878 + -0.9 679,878 + +0.1 679,882 + +1.1 679,990 + +3.5 679,990 + -3.4 679,990 + +3.5 679,990 + -1.8 679,990 + +2.7 679,990 + -2.7 679,990 + +4.5 679,990 + +2.9 679,990 + -0.7 679,990 + -0.1 679,990 + -0.9 679,991 - -2.0 679,991 - +2.9 679,991 - +4.4 679,991 - +0.6 679,991 - +1.1 679,991 - -1.4 679,991 - -1.3 679,991 - -0.6 679,991 - +1.1 680,001 + +0.7 680,001 + +3.6 680,002 - +1.1 680,135 + Psyr_0591 0.23 +4.7 680,135 + Psyr_0591 0.23 -2.0 680,135 + Psyr_0591 0.23 +1.1 680,135 + Psyr_0591 0.23 +0.1 680,135 + Psyr_0591 0.23 -1.6 680,135 + Psyr_0591 0.23 +1.4 680,135 + Psyr_0591 0.23 +3.6 680,136 - Psyr_0591 0.23 +0.5 680,136 - Psyr_0591 0.23 +1.3 680,136 - Psyr_0591 0.23 -1.8 680,136 - Psyr_0591 0.23 +0.1 680,136 - Psyr_0591 0.23 +2.1 680,136 - Psyr_0591 0.23 +3.5 680,136 - Psyr_0591 0.23 +0.1 680,136 - Psyr_0591 0.23 -0.3 680,136 - Psyr_0591 0.23 +0.8 680,230 + Psyr_0591 0.44 -0.6 680,231 - Psyr_0591 0.44 +0.6 680,306 + Psyr_0591 0.61 +0.2 680,306 + Psyr_0591 0.61 +1.1 680,306 + Psyr_0591 0.61 -3.3 680,306 + Psyr_0591 0.61 +2.5 680,307 - Psyr_0591 0.61 -0.3 680,307 - Psyr_0591 0.61 +3.5 680,414 + Psyr_0591 0.85 -1.1 680,415 - Psyr_0591 0.85 +2.7 680,477 + +0.8
Or see this region's nucleotide sequence