Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0565

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0563 and Psyr_0564 are separated by 108 nucleotidesPsyr_0564 and Psyr_0565 are separated by 96 nucleotidesPsyr_0565 and Psyr_0566 are separated by 736 nucleotides Psyr_0563: Psyr_0563 - Protein of unknown function DUF258, at 639,956 to 640,987 _0563 Psyr_0564: Psyr_0564 - Exonuclease, at 641,096 to 641,632 _0564 Psyr_0565: Psyr_0565 - Protein of unknown function UPF0126, at 641,729 to 642,340 _0565 Psyr_0566: Psyr_0566 - 4Fe-4S cluster binding protein, at 643,077 to 644,165 _0566 Position (kb) 641 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 641.007 kb on - strandat 641.007 kb on - strandat 641.018 kb on + strandat 641.019 kb on - strandat 641.019 kb on - strandat 641.046 kb on + strandat 641.046 kb on + strandat 641.046 kb on + strandat 641.064 kb on + strandat 641.064 kb on + strandat 641.065 kb on - strandat 641.077 kb on + strandat 641.078 kb on - strandat 641.657 kb on - strandat 641.657 kb on - strandat 641.657 kb on - strandat 641.697 kb on - strandat 641.744 kb on + strandat 641.745 kb on - strandat 641.745 kb on - strandat 641.745 kb on - strandat 641.745 kb on - strandat 641.755 kb on + strandat 641.871 kb on + strand, within Psyr_0565at 641.871 kb on + strand, within Psyr_0565at 641.871 kb on + strand, within Psyr_0565at 641.871 kb on + strand, within Psyr_0565at 641.872 kb on - strand, within Psyr_0565at 641.872 kb on - strand, within Psyr_0565at 641.915 kb on + strand, within Psyr_0565at 641.916 kb on - strand, within Psyr_0565at 642.025 kb on + strand, within Psyr_0565at 642.025 kb on + strand, within Psyr_0565at 642.040 kb on + strand, within Psyr_0565at 642.040 kb on + strand, within Psyr_0565at 642.041 kb on - strand, within Psyr_0565at 642.170 kb on + strand, within Psyr_0565at 642.171 kb on - strand, within Psyr_0565at 642.210 kb on + strand, within Psyr_0565at 642.211 kb on - strand, within Psyr_0565at 642.218 kb on + strand, within Psyr_0565at 642.219 kb on - strand, within Psyr_0565at 642.323 kb on + strandat 642.324 kb on - strandat 642.324 kb on - strandat 642.324 kb on - strandat 642.325 kb on + strandat 642.326 kb on - strandat 642.376 kb on + strandat 642.376 kb on + strandat 642.376 kb on + strandat 642.376 kb on + strandat 642.376 kb on + strandat 642.377 kb on - strandat 642.377 kb on - strandat 642.377 kb on - strandat 642.408 kb on - strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.415 kb on + strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.416 kb on - strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.470 kb on + strandat 642.471 kb on - strandat 642.471 kb on - strandat 642.471 kb on - strandat 642.471 kb on - strandat 642.471 kb on - strandat 642.471 kb on - strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.727 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.841 kb on + strandat 642.843 kb on + strandat 642.843 kb on + strandat 642.845 kb on + strandat 642.845 kb on + strandat 642.845 kb on + strandat 642.905 kb on - strandat 642.905 kb on - strandat 642.905 kb on - strandat 642.905 kb on - strandat 642.905 kb on - strandat 643.018 kb on + strandat 643.018 kb on + strandat 643.018 kb on + strandat 643.018 kb on + strandat 643.018 kb on + strandat 643.018 kb on + strandat 643.020 kb on + strandat 643.020 kb on + strandat 643.020 kb on + strandat 643.020 kb on + strandat 643.020 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.022 kb on + strandat 643.061 kb on + strandat 643.072 kb on + strandat 643.078 kb on + strandat 643.078 kb on + strandat 643.235 kb on - strand, within Psyr_0566

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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641,007 - -1.8
641,007 - +0.7
641,018 + +2.7
641,019 - -0.4
641,019 - +2.1
641,046 + -0.5
641,046 + -1.0
641,046 + +1.7
641,064 + +0.1
641,064 + +2.1
641,065 - -0.0
641,077 + +1.7
641,078 - +0.1
641,657 - -0.0
641,657 - -1.1
641,657 - -0.0
641,697 - -2.5
641,744 + +0.5
641,745 - +2.5
641,745 - -1.8
641,745 - +0.1
641,745 - +1.7
641,755 + -0.8
641,871 + Psyr_0565 0.23 +0.1
641,871 + Psyr_0565 0.23 -1.4
641,871 + Psyr_0565 0.23 +1.7
641,871 + Psyr_0565 0.23 -4.0
641,872 - Psyr_0565 0.23 -1.1
641,872 - Psyr_0565 0.23 -1.9
641,915 + Psyr_0565 0.30 -0.6
641,916 - Psyr_0565 0.31 -2.9
642,025 + Psyr_0565 0.48 +3.1
642,025 + Psyr_0565 0.48 -1.1
642,040 + Psyr_0565 0.51 +0.1
642,040 + Psyr_0565 0.51 -4.0
642,041 - Psyr_0565 0.51 -2.9
642,170 + Psyr_0565 0.72 -1.0
642,171 - Psyr_0565 0.72 +0.1
642,210 + Psyr_0565 0.79 -1.8
642,211 - Psyr_0565 0.79 +1.1
642,218 + Psyr_0565 0.80 +2.1
642,219 - Psyr_0565 0.80 -3.4
642,323 + +0.6
642,324 - +3.1
642,324 - -3.0
642,324 - +0.3
642,325 + -0.6
642,326 - -3.2
642,376 + -0.1
642,376 + -1.2
642,376 + -0.5
642,376 + -2.1
642,376 + -0.7
642,377 - +2.5
642,377 - -2.5
642,377 - -0.5
642,408 - +1.0
642,415 + -1.5
642,415 + -1.2
642,415 + +2.7
642,415 + +2.5
642,415 + +2.7
642,415 + -2.0
642,415 + -1.3
642,415 + -0.3
642,415 + +4.0
642,415 + -2.5
642,415 + +2.1
642,415 + +2.9
642,416 - -0.5
642,416 - +0.1
642,416 - -3.3
642,416 - -2.2
642,416 - -0.7
642,416 - -1.2
642,416 - +0.5
642,416 - -1.2
642,416 - -0.6
642,470 + -0.0
642,470 + -1.2
642,470 + -2.3
642,470 + +4.5
642,470 + -0.5
642,470 + +3.1
642,470 + -1.7
642,470 + +2.0
642,470 + +1.9
642,471 - -0.3
642,471 - -1.4
642,471 - -1.7
642,471 - +3.7
642,471 - -0.3
642,471 - +0.7
642,727 + -1.3
642,727 + -0.3
642,727 + +2.5
642,727 + +2.5
642,727 + -1.4
642,727 + +3.5
642,727 + +1.7
642,727 + +0.3
642,727 + +0.3
642,727 + -2.0
642,727 + +3.5
642,727 + -1.1
642,727 + -0.0
642,727 + +0.1
642,841 + -2.9
642,841 + +2.5
642,841 + +3.1
642,841 + -1.8
642,841 + +1.7
642,841 + -0.6
642,841 + +1.7
642,843 + -0.1
642,843 + -1.7
642,845 + -2.1
642,845 + -0.5
642,845 + -0.1
642,905 - -3.0
642,905 - -0.1
642,905 - +1.2
642,905 - +1.1
642,905 - -0.2
643,018 + -1.0
643,018 + -1.1
643,018 + -0.9
643,018 + -0.2
643,018 + -0.8
643,018 + +1.7
643,020 + -1.3
643,020 + +1.1
643,020 + -0.5
643,020 + -2.5
643,020 + -1.9
643,022 + -0.9
643,022 + +2.5
643,022 + -0.4
643,022 + -0.8
643,022 + -0.7
643,022 + +2.1
643,022 + -1.5
643,061 + +1.7
643,072 + +3.5
643,078 + -0.9
643,078 + +0.3
643,235 - Psyr_0566 0.15 -1.2

Or see this region's nucleotide sequence