Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0546 and Psyr_0547 are separated by 177 nucleotides Psyr_0547 and Psyr_0548 overlap by 10 nucleotides Psyr_0548 and Psyr_0549 are separated by 145 nucleotides
Psyr_0546: Psyr_0546 - lipoprotein, putative, at 618,752 to 619,498
_0546
Psyr_0547: Psyr_0547 - Conserved hypothetical protein 52, at 619,676 to 620,323
_0547
Psyr_0548: Psyr_0548 - Protein of unknown function DUF1249, at 620,314 to 620,766
_0548
Psyr_0549: Psyr_0549 - Metallophosphoesterase, at 620,912 to 621,718
_0549
Position (kb)
620
621 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.537 kb on + strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.538 kb on - strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.541 kb on + strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.542 kb on - strand at 619.561 kb on + strand at 619.562 kb on - strand at 619.562 kb on - strand at 619.594 kb on - strand at 619.620 kb on - strand at 619.620 kb on - strand at 619.664 kb on + strand at 619.750 kb on - strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.778 kb on + strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.779 kb on - strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.780 kb on + strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.781 kb on - strand, within Psyr_0547 at 619.886 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.081 kb on + strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.082 kb on - strand, within Psyr_0547 at 620.313 kb on + strand at 620.314 kb on - strand at 620.314 kb on - strand at 620.327 kb on + strand at 620.328 kb on - strand at 620.328 kb on - strand at 620.328 kb on - strand at 620.387 kb on - strand, within Psyr_0548 at 620.478 kb on - strand, within Psyr_0548 at 620.510 kb on - strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.584 kb on + strand, within Psyr_0548 at 620.585 kb on - strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.647 kb on + strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 620.648 kb on - strand, within Psyr_0548 at 621.117 kb on - strand, within Psyr_0549 at 621.448 kb on - strand, within Psyr_0549 at 621.486 kb on + strand, within Psyr_0549 at 621.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 619,537 + +2.5 619,537 + +1.1 619,537 + -2.4 619,537 + -1.2 619,537 + -1.1 619,537 + -0.6 619,537 + +3.5 619,537 + -0.5 619,537 + -4.0 619,537 + -1.1 619,537 + -4.8 619,537 + -1.3 619,538 - -1.5 619,538 - +0.9 619,538 - +2.9 619,538 - -2.0 619,538 - -1.3 619,538 - -0.6 619,541 + -2.1 619,541 + -0.9 619,541 + -2.0 619,541 + +2.7 619,541 + +1.9 619,541 + +0.0 619,541 + -0.8 619,542 - +2.5 619,542 - +2.5 619,542 - -0.8 619,542 - -0.4 619,542 - -1.3 619,542 - -0.3 619,542 - -3.6 619,542 - +0.3 619,542 - -1.5 619,561 + -1.9 619,562 - -0.4 619,562 - -0.9 619,594 - -0.5 619,620 - -2.1 619,620 - +2.6 619,664 + +3.6 619,750 - Psyr_0547 0.11 -0.0 619,778 + Psyr_0547 0.16 -1.4 619,778 + Psyr_0547 0.16 +0.1 619,778 + Psyr_0547 0.16 -1.4 619,778 + Psyr_0547 0.16 -0.7 619,778 + Psyr_0547 0.16 -1.1 619,778 + Psyr_0547 0.16 +2.5 619,778 + Psyr_0547 0.16 +1.6 619,778 + Psyr_0547 0.16 +3.3 619,778 + Psyr_0547 0.16 +1.1 619,778 + Psyr_0547 0.16 +2.1 619,778 + Psyr_0547 0.16 +3.9 619,779 - Psyr_0547 0.16 +3.1 619,779 - Psyr_0547 0.16 -0.0 619,779 - Psyr_0547 0.16 +0.3 619,779 - Psyr_0547 0.16 -1.2 619,779 - Psyr_0547 0.16 +0.1 619,779 - Psyr_0547 0.16 +1.7 619,779 - Psyr_0547 0.16 +0.4 619,780 + Psyr_0547 0.16 -0.6 619,780 + Psyr_0547 0.16 +2.7 619,780 + Psyr_0547 0.16 +3.1 619,781 - Psyr_0547 0.16 +4.2 619,781 - Psyr_0547 0.16 -1.9 619,781 - Psyr_0547 0.16 -1.2 619,781 - Psyr_0547 0.16 +2.1 619,781 - Psyr_0547 0.16 -3.0 619,886 + Psyr_0547 0.32 -1.7 620,081 + Psyr_0547 0.62 +1.3 620,081 + Psyr_0547 0.62 -0.6 620,081 + Psyr_0547 0.62 -0.9 620,081 + Psyr_0547 0.62 +2.7 620,081 + Psyr_0547 0.62 +3.3 620,081 + Psyr_0547 0.62 -0.4 620,081 + Psyr_0547 0.62 +3.5 620,082 - Psyr_0547 0.63 +2.9 620,082 - Psyr_0547 0.63 -3.4 620,082 - Psyr_0547 0.63 -2.9 620,082 - Psyr_0547 0.63 +0.2 620,082 - Psyr_0547 0.63 +3.7 620,082 - Psyr_0547 0.63 +3.5 620,082 - Psyr_0547 0.63 +1.1 620,082 - Psyr_0547 0.63 -0.0 620,082 - Psyr_0547 0.63 +1.7 620,313 + -1.7 620,314 - +0.9 620,314 - -0.8 620,327 + -1.8 620,328 - +2.1 620,328 - +0.1 620,328 - -0.8 620,387 - Psyr_0548 0.16 +2.7 620,478 - Psyr_0548 0.36 +0.6 620,510 - Psyr_0548 0.43 -2.3 620,584 + Psyr_0548 0.60 +1.1 620,584 + Psyr_0548 0.60 -1.1 620,584 + Psyr_0548 0.60 +2.5 620,584 + Psyr_0548 0.60 +3.5 620,584 + Psyr_0548 0.60 -2.0 620,584 + Psyr_0548 0.60 -1.2 620,585 - Psyr_0548 0.60 +3.8 620,647 + Psyr_0548 0.74 +1.7 620,647 + Psyr_0548 0.74 -2.1 620,647 + Psyr_0548 0.74 +2.5 620,647 + Psyr_0548 0.74 -1.3 620,648 - Psyr_0548 0.74 +2.8 620,648 - Psyr_0548 0.74 +4.0 620,648 - Psyr_0548 0.74 +3.5 621,117 - Psyr_0549 0.25 -3.0 621,448 - Psyr_0549 0.66 +3.8 621,486 + Psyr_0549 0.71 +3.3 621,733 - -1.0
Or see this region's nucleotide sequence