Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0498

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0496 and Psyr_0497 are separated by 15 nucleotidesPsyr_0497 and Psyr_0498 are separated by 2 nucleotidesPsyr_0498 and Psyr_0499 are separated by 9 nucleotides Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307 _0496 Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087 _0497 Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884 _0498 Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498 _0499 Position (kb) 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.222 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.280 kb on + strandat 539.281 kb on - strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.644 kb on + strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 540.228 kb on + strand, within Psyr_0498at 540.228 kb on + strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.528 kb on + strand, within Psyr_0498at 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.870 kb on + strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.873 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.882 kb on + strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.903 kb on + strandat 541.149 kb on + strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.150 kb on - strand, within Psyr_0499at 541.233 kb on + strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.234 kb on - strand, within Psyr_0499at 541.273 kb on - strand, within Psyr_0499at 541.370 kb on + strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.371 kb on - strand, within Psyr_0499at 541.374 kb on + strand, within Psyr_0499at 541.569 kb on + strand, within Psyr_0499at 541.569 kb on + strand, within Psyr_0499at 541.570 kb on - strand, within Psyr_0499at 541.848 kb on + strand, within Psyr_0499at 541.849 kb on - strand, within Psyr_0499at 541.865 kb on - strand, within Psyr_0499

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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539,161 + Psyr_0496 0.88 +0.5
539,161 + Psyr_0496 0.88 +0.1
539,161 + Psyr_0496 0.88 -0.2
539,161 + Psyr_0496 0.88 -0.3
539,161 + Psyr_0496 0.88 -1.8
539,161 + Psyr_0496 0.88 +3.8
539,162 - Psyr_0496 0.88 +1.4
539,162 - Psyr_0496 0.88 +0.1
539,162 - Psyr_0496 0.88 -1.3
539,162 - Psyr_0496 0.88 -1.7
539,162 - Psyr_0496 0.88 -3.3
539,162 - Psyr_0496 0.88 -1.1
539,162 - Psyr_0496 0.88 +1.7
539,222 + -1.1
539,254 + -1.7
539,254 + +0.4
539,254 + -2.0
539,254 + +0.3
539,254 + -1.7
539,255 - -0.7
539,255 - +2.1
539,255 - -1.3
539,255 - -1.2
539,280 + -0.7
539,281 - +4.5
539,333 + -0.1
539,333 + -2.7
539,333 + -3.0
539,333 + +0.5
539,334 - +0.6
539,334 - +4.1
539,334 - -0.9
539,334 - -0.7
539,590 + Psyr_0497 0.35 +2.7
539,590 + Psyr_0497 0.35 -2.7
539,590 + Psyr_0497 0.35 -1.7
539,591 - Psyr_0497 0.35 +1.5
539,591 - Psyr_0497 0.35 +2.1
539,644 + Psyr_0497 0.42 +2.1
539,645 - Psyr_0497 0.42 -1.4
539,645 - Psyr_0497 0.42 +4.6
539,668 + Psyr_0497 0.45 +2.1
539,668 + Psyr_0497 0.45 -0.5
539,669 - Psyr_0497 0.45 -0.6
539,669 - Psyr_0497 0.45 +2.7
539,834 - Psyr_0497 0.67 +3.6
539,834 - Psyr_0497 0.67 +0.1
540,228 + Psyr_0498 0.17 +3.3
540,228 + Psyr_0498 0.17 -0.5
540,229 - Psyr_0498 0.17 +4.9
540,528 + Psyr_0498 0.55 -0.8
540,528 + Psyr_0498 0.55 +3.3
540,870 + -2.5
540,870 + -0.1
540,870 + -1.2
540,870 + +2.7
540,871 - +3.5
540,871 - +2.7
540,871 - +4.9
540,871 - +2.7
540,871 - -2.6
540,871 - +0.1
540,871 - -1.3
540,871 - +3.1
540,871 - -0.5
540,871 - -1.1
540,873 + +4.5
540,880 + -1.3
540,880 + +0.6
540,880 + -0.6
540,880 + -3.4
540,880 + +1.7
540,880 + -1.2
540,880 + -0.2
540,880 + -1.8
540,880 + +2.5
540,880 + +3.9
540,881 - -1.0
540,881 - +3.6
540,881 - +2.7
540,881 - -1.4
540,881 - +1.1
540,881 - -0.2
540,881 - +0.9
540,881 - -1.0
540,881 - -1.7
540,882 + +2.9
540,882 + -0.1
540,882 + +1.0
540,883 - -0.9
540,883 - +0.3
540,903 + +3.5
541,149 + Psyr_0499 0.16 +0.0
541,150 - Psyr_0499 0.16 -0.6
541,150 - Psyr_0499 0.16 -0.3
541,150 - Psyr_0499 0.16 -0.5
541,150 - Psyr_0499 0.16 -1.7
541,150 - Psyr_0499 0.16 +0.2
541,233 + Psyr_0499 0.21 +0.2
541,234 - Psyr_0499 0.21 +3.5
541,234 - Psyr_0499 0.21 -1.7
541,234 - Psyr_0499 0.21 -1.3
541,273 - Psyr_0499 0.24 -1.5
541,370 + Psyr_0499 0.30 +0.1
541,371 - Psyr_0499 0.30 -1.7
541,371 - Psyr_0499 0.30 +4.0
541,371 - Psyr_0499 0.30 +2.7
541,371 - Psyr_0499 0.30 +2.7
541,374 + Psyr_0499 0.30 -0.1
541,569 + Psyr_0499 0.42 +2.9
541,569 + Psyr_0499 0.42 -0.3
541,570 - Psyr_0499 0.42 -0.9
541,848 + Psyr_0499 0.59 +3.3
541,849 - Psyr_0499 0.60 -0.9
541,865 - Psyr_0499 0.60 -2.2

Or see this region's nucleotide sequence