Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0471

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0469 and Psyr_0470 are separated by 75 nucleotidesPsyr_0470 and Psyr_0471 are separated by 9 nucleotidesPsyr_0471 and Psyr_0472 overlap by 4 nucleotidesPsyr_0472 and Psyr_0473 are separated by 33 nucleotides Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984 _0469 Psyr_0470: Psyr_0470 - conserved hypothetical protein, at 510,060 to 510,383 _0470 Psyr_0471: Psyr_0471 - coproporphyrinogen III oxidase, anaerobic, at 510,393 to 511,607 _0471 Psyr_0472: Psyr_0472 - Ham1-like protein, at 511,604 to 512,197 _0472 Psyr_0473: Psyr_0473 - Methionine biosynthesis MetW, at 512,231 to 512,851 _0473 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 509.404 kb on + strand, within Psyr_0469at 509.405 kb on - strand, within Psyr_0469at 509.405 kb on - strand, within Psyr_0469at 509.405 kb on - strand, within Psyr_0469at 509.405 kb on - strand, within Psyr_0469at 509.406 kb on + strand, within Psyr_0469at 509.406 kb on + strand, within Psyr_0469at 509.407 kb on - strand, within Psyr_0469at 509.611 kb on - strand, within Psyr_0469at 509.623 kb on - strand, within Psyr_0469at 509.910 kb on + strandat 509.996 kb on - strandat 510.002 kb on + strandat 510.003 kb on - strandat 510.003 kb on - strandat 510.003 kb on - strandat 510.061 kb on + strandat 510.061 kb on + strandat 510.061 kb on + strandat 510.062 kb on - strandat 510.062 kb on - strandat 510.062 kb on - strandat 510.124 kb on + strand, within Psyr_0470at 510.124 kb on + strand, within Psyr_0470at 510.124 kb on + strand, within Psyr_0470at 510.124 kb on + strand, within Psyr_0470at 510.169 kb on + strand, within Psyr_0470at 510.169 kb on + strand, within Psyr_0470at 510.170 kb on - strand, within Psyr_0470at 510.170 kb on - strand, within Psyr_0470at 510.394 kb on + strandat 510.394 kb on + strandat 510.394 kb on + strandat 510.394 kb on + strandat 510.394 kb on + strandat 510.394 kb on + strandat 510.395 kb on - strandat 510.395 kb on - strandat 510.406 kb on + strandat 510.406 kb on + strandat 510.407 kb on - strandat 510.550 kb on - strand, within Psyr_0471at 510.665 kb on - strand, within Psyr_0471at 510.692 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.811 kb on + strand, within Psyr_0471at 510.811 kb on + strand, within Psyr_0471at 510.812 kb on - strand, within Psyr_0471at 510.826 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.469 kb on - strand, within Psyr_0471at 511.496 kb on + strandat 511.496 kb on + strandat 511.497 kb on - strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.835 kb on + strand, within Psyr_0472at 511.835 kb on + strand, within Psyr_0472at 511.836 kb on - strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.948 kb on + strand, within Psyr_0472at 512.277 kb on + strandat 512.277 kb on + strandat 512.303 kb on - strand, within Psyr_0473at 512.436 kb on + strand, within Psyr_0473at 512.437 kb on - strand, within Psyr_0473at 512.443 kb on + strand, within Psyr_0473at 512.444 kb on - strand, within Psyr_0473at 512.444 kb on - strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.490 kb on + strand, within Psyr_0473at 512.490 kb on + strand, within Psyr_0473at 512.491 kb on - strand, within Psyr_0473at 512.491 kb on - strand, within Psyr_0473

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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509,404 + Psyr_0469 0.69 -1.0
509,405 - Psyr_0469 0.69 +4.4
509,405 - Psyr_0469 0.69 -0.2
509,405 - Psyr_0469 0.69 -1.0
509,405 - Psyr_0469 0.69 +0.1
509,406 + Psyr_0469 0.69 +2.5
509,406 + Psyr_0469 0.69 -0.9
509,407 - Psyr_0469 0.69 +3.1
509,611 - Psyr_0469 0.80 +0.1
509,623 - Psyr_0469 0.80 +0.4
509,910 + +2.1
509,996 - -0.3
510,002 + +2.9
510,003 - +0.7
510,003 - -2.0
510,003 - -1.8
510,061 + +3.3
510,061 + -0.5
510,061 + +3.1
510,062 - -1.4
510,062 - +0.0
510,062 - -0.4
510,124 + Psyr_0470 0.20 -0.7
510,124 + Psyr_0470 0.20 -0.9
510,124 + Psyr_0470 0.20 +0.5
510,124 + Psyr_0470 0.20 -0.9
510,169 + Psyr_0470 0.34 +0.2
510,169 + Psyr_0470 0.34 -1.2
510,170 - Psyr_0470 0.34 -0.8
510,170 - Psyr_0470 0.34 +3.3
510,394 + -0.5
510,394 + +3.5
510,394 + +1.5
510,394 + +3.0
510,394 + +0.8
510,394 + -0.9
510,395 - +2.9
510,395 - +2.7
510,406 + +2.7
510,406 + +1.7
510,407 - +3.8
510,550 - Psyr_0471 0.13 -0.0
510,665 - Psyr_0471 0.22 +0.1
510,692 + Psyr_0471 0.25 +1.7
510,772 + Psyr_0471 0.31 +1.7
510,772 + Psyr_0471 0.31 -2.0
510,772 + Psyr_0471 0.31 -1.8
510,772 + Psyr_0471 0.31 +2.5
510,811 + Psyr_0471 0.34 +0.1
510,811 + Psyr_0471 0.34 -2.5
510,812 - Psyr_0471 0.34 +1.7
510,826 + Psyr_0471 0.36 -2.0
511,417 + Psyr_0471 0.84 -2.7
511,417 + Psyr_0471 0.84 +3.9
511,417 + Psyr_0471 0.84 -1.1
511,417 + Psyr_0471 0.84 -0.7
511,417 + Psyr_0471 0.84 +1.1
511,417 + Psyr_0471 0.84 -1.3
511,417 + Psyr_0471 0.84 +0.7
511,417 + Psyr_0471 0.84 +0.2
511,417 + Psyr_0471 0.84 -1.4
511,417 + Psyr_0471 0.84 +1.2
511,417 + Psyr_0471 0.84 +2.5
511,418 - Psyr_0471 0.84 -0.9
511,418 - Psyr_0471 0.84 -1.8
511,418 - Psyr_0471 0.84 +3.3
511,418 - Psyr_0471 0.84 -0.4
511,418 - Psyr_0471 0.84 -2.3
511,418 - Psyr_0471 0.84 -1.2
511,418 - Psyr_0471 0.84 -0.4
511,469 - Psyr_0471 0.89 -0.7
511,496 + -1.0
511,496 + +0.7
511,497 - +0.7
511,504 + -0.9
511,504 + +1.1
511,504 + +3.9
511,504 + +0.1
511,505 - +2.5
511,505 - +0.8
511,505 - -1.3
511,505 - -1.0
511,505 - +2.7
511,505 - -0.1
511,835 + Psyr_0472 0.39 +0.6
511,835 + Psyr_0472 0.39 -0.8
511,836 - Psyr_0472 0.39 +0.1
511,944 + Psyr_0472 0.57 +2.7
511,944 + Psyr_0472 0.57 +3.6
511,944 + Psyr_0472 0.57 -2.3
511,944 + Psyr_0472 0.57 -2.8
511,944 + Psyr_0472 0.57 +1.7
511,944 + Psyr_0472 0.57 -0.0
511,944 + Psyr_0472 0.57 -2.4
511,944 + Psyr_0472 0.57 -1.1
511,944 + Psyr_0472 0.57 +0.7
511,944 + Psyr_0472 0.57 -0.7
511,945 - Psyr_0472 0.57 -0.0
511,945 - Psyr_0472 0.57 -1.3
511,945 - Psyr_0472 0.57 -0.3
511,945 - Psyr_0472 0.57 +2.7
511,945 - Psyr_0472 0.57 +1.7
511,945 - Psyr_0472 0.57 +0.7
511,948 + Psyr_0472 0.58 +1.1
512,277 + -0.9
512,277 + -1.4
512,303 - Psyr_0473 0.12 +4.3
512,436 + Psyr_0473 0.33 +2.1
512,437 - Psyr_0473 0.33 -1.4
512,443 + Psyr_0473 0.34 -1.6
512,444 - Psyr_0473 0.34 -2.4
512,444 - Psyr_0473 0.34 -0.7
512,445 + Psyr_0473 0.34 -1.4
512,445 + Psyr_0473 0.34 -0.8
512,445 + Psyr_0473 0.34 -1.9
512,446 - Psyr_0473 0.35 -3.7
512,446 - Psyr_0473 0.35 +2.5
512,446 - Psyr_0473 0.35 -0.6
512,490 + Psyr_0473 0.42 +2.1
512,490 + Psyr_0473 0.42 +1.8
512,491 - Psyr_0473 0.42 +2.5
512,491 - Psyr_0473 0.42 +1.3

Or see this region's nucleotide sequence