Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0455 and Psyr_0456 are separated by 357 nucleotides Psyr_0456 and Psyr_0457 are separated by 27 nucleotides Psyr_0457 and Psyr_0458 are separated by 393 nucleotides
Psyr_0455: Psyr_0455 - Amine oxidase, at 491,164 to 493,038
_0455
Psyr_0456: Psyr_0456 - Cytochrome B561, bacterial, at 493,396 to 493,944
_0456
Psyr_0457: Psyr_0457 - YceI, at 493,972 to 494,550
_0457
Psyr_0458: Psyr_0458 - Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal, at 494,944 to 496,833
_0458
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 493.091 kb on - strand at 493.110 kb on + strand at 493.111 kb on - strand at 493.111 kb on - strand at 493.111 kb on - strand at 493.283 kb on + strand at 493.284 kb on - strand at 493.363 kb on + strand at 493.363 kb on + strand at 493.363 kb on + strand at 493.364 kb on - strand at 493.364 kb on - strand at 493.364 kb on - strand at 493.389 kb on - strand at 493.389 kb on - strand at 493.389 kb on - strand at 493.394 kb on + strand at 493.394 kb on + strand at 493.395 kb on - strand at 493.395 kb on - strand at 493.403 kb on + strand at 493.403 kb on + strand at 493.404 kb on - strand at 493.404 kb on - strand at 493.404 kb on - strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.407 kb on + strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.408 kb on - strand at 493.514 kb on - strand, within Psyr_0456 at 493.514 kb on - strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.516 kb on + strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.517 kb on - strand, within Psyr_0456 at 493.521 kb on + strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.522 kb on - strand, within Psyr_0456 at 493.639 kb on + strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.640 kb on - strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.644 kb on + strand, within Psyr_0456 at 493.645 kb on - strand, within Psyr_0456 at 493.645 kb on - strand, within Psyr_0456 at 493.687 kb on + strand, within Psyr_0456 at 493.687 kb on + strand, within Psyr_0456 at 493.688 kb on - strand, within Psyr_0456 at 493.688 kb on - strand, within Psyr_0456 at 493.834 kb on + strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.835 kb on - strand, within Psyr_0456 at 493.926 kb on + strand at 493.926 kb on + strand at 493.927 kb on - strand at 493.927 kb on - strand at 493.938 kb on + strand at 493.938 kb on + strand at 493.939 kb on - strand at 493.939 kb on - strand at 493.965 kb on + strand at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.047 kb on + strand, within Psyr_0457 at 494.048 kb on - strand, within Psyr_0457 at 494.108 kb on - strand, within Psyr_0457 at 494.108 kb on - strand, within Psyr_0457 at 494.124 kb on + strand, within Psyr_0457 at 494.124 kb on + strand, within Psyr_0457 at 494.125 kb on - strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.278 kb on + strand, within Psyr_0457 at 494.366 kb on + strand, within Psyr_0457 at 494.537 kb on + strand at 494.538 kb on - strand at 494.538 kb on - strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.548 kb on + strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.549 kb on - strand at 494.665 kb on + strand at 494.665 kb on + strand at 494.666 kb on - strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.667 kb on + strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.668 kb on - strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.752 kb on + strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.753 kb on - strand at 494.754 kb on + strand at 494.808 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.839 kb on + strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.840 kb on - strand at 494.843 kb on + strand at 494.843 kb on + strand at 494.843 kb on + strand at 494.844 kb on - strand at 494.844 kb on - strand at 494.844 kb on - strand at 494.889 kb on - strand at 494.889 kb on - strand at 495.362 kb on + strand, within Psyr_0458 at 495.362 kb on + strand, within Psyr_0458 at 495.363 kb on - strand, within Psyr_0458 at 495.388 kb on + strand, within Psyr_0458 at 495.388 kb on + strand, within Psyr_0458 at 495.389 kb on - strand, within Psyr_0458 at 495.389 kb on - strand, within Psyr_0458
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 493,091 - +3.7 493,110 + -1.3 493,111 - +2.5 493,111 - -3.3 493,111 - -2.2 493,283 + +2.7 493,284 - -0.4 493,363 + -1.5 493,363 + -1.0 493,363 + +0.1 493,364 - -3.1 493,364 - +0.2 493,364 - +1.7 493,389 - -0.0 493,389 - +2.1 493,389 - -1.9 493,394 + +1.7 493,394 + -0.6 493,395 - +2.1 493,395 - +1.7 493,403 + -0.2 493,403 + -1.0 493,404 - -3.4 493,404 - -0.4 493,404 - +3.1 493,407 + -0.9 493,407 + +0.3 493,407 + +2.5 493,407 + +1.1 493,407 + +0.2 493,407 + +1.1 493,407 + -1.2 493,408 - +0.1 493,408 - -0.7 493,408 - -1.1 493,408 - -0.7 493,408 - +0.7 493,408 - -2.2 493,408 - -0.8 493,408 - -0.7 493,514 - Psyr_0456 0.21 +4.0 493,514 - Psyr_0456 0.21 +0.2 493,516 + Psyr_0456 0.22 -0.2 493,516 + Psyr_0456 0.22 -1.2 493,516 + Psyr_0456 0.22 -1.1 493,516 + Psyr_0456 0.22 +4.1 493,516 + Psyr_0456 0.22 -0.7 493,516 + Psyr_0456 0.22 +2.5 493,516 + Psyr_0456 0.22 -0.0 493,517 - Psyr_0456 0.22 -3.4 493,517 - Psyr_0456 0.22 +2.7 493,517 - Psyr_0456 0.22 +2.7 493,521 + Psyr_0456 0.23 +2.7 493,522 - Psyr_0456 0.23 -1.0 493,522 - Psyr_0456 0.23 -3.3 493,522 - Psyr_0456 0.23 +0.3 493,522 - Psyr_0456 0.23 -2.1 493,522 - Psyr_0456 0.23 +4.0 493,639 + Psyr_0456 0.44 +3.8 493,640 - Psyr_0456 0.44 +3.1 493,640 - Psyr_0456 0.44 -0.1 493,640 - Psyr_0456 0.44 -1.3 493,644 + Psyr_0456 0.45 -1.0 493,644 + Psyr_0456 0.45 +2.0 493,644 + Psyr_0456 0.45 +1.1 493,644 + Psyr_0456 0.45 -0.4 493,645 - Psyr_0456 0.45 -0.7 493,645 - Psyr_0456 0.45 -0.7 493,687 + Psyr_0456 0.53 -0.6 493,687 + Psyr_0456 0.53 -0.1 493,688 - Psyr_0456 0.53 +0.1 493,688 - Psyr_0456 0.53 +3.6 493,834 + Psyr_0456 0.80 -0.3 493,835 - Psyr_0456 0.80 +2.1 493,835 - Psyr_0456 0.80 +3.7 493,835 - Psyr_0456 0.80 -0.5 493,835 - Psyr_0456 0.80 -1.5 493,926 + -0.4 493,926 + +0.7 493,927 - +2.7 493,927 - -0.5 493,938 + +3.9 493,938 + +4.1 493,939 - +2.1 493,939 - -0.3 493,965 + -0.0 494,047 + Psyr_0457 0.13 -2.4 494,047 + Psyr_0457 0.13 +0.3 494,047 + Psyr_0457 0.13 -0.0 494,047 + Psyr_0457 0.13 +2.1 494,048 - Psyr_0457 0.13 +2.7 494,108 - Psyr_0457 0.23 +1.2 494,108 - Psyr_0457 0.23 +2.9 494,124 + Psyr_0457 0.26 -0.8 494,124 + Psyr_0457 0.26 -3.4 494,125 - Psyr_0457 0.26 +0.8 494,278 + Psyr_0457 0.53 -0.5 494,278 + Psyr_0457 0.53 -1.0 494,278 + Psyr_0457 0.53 +1.7 494,366 + Psyr_0457 0.68 -0.9 494,537 + -0.4 494,538 - -1.8 494,538 - -1.7 494,548 + +4.0 494,548 + -0.5 494,548 + +3.5 494,548 + -0.1 494,548 + +4.5 494,549 - -2.0 494,549 - -1.7 494,549 - -0.6 494,549 - +2.1 494,549 - -1.9 494,549 - -0.6 494,665 + -1.3 494,665 + +2.5 494,666 - +0.0 494,667 + -0.1 494,667 + -2.0 494,667 + -1.4 494,667 + -1.9 494,667 + +1.1 494,667 + -0.6 494,667 + -1.7 494,667 + -1.5 494,667 + +2.5 494,667 + +0.1 494,667 + +2.1 494,667 + -1.2 494,667 + +1.7 494,667 + -1.5 494,667 + -1.4 494,667 + +0.4 494,667 + +3.3 494,667 + +1.5 494,667 + +2.3 494,667 + +4.5 494,667 + -1.1 494,667 + -0.4 494,667 + +0.3 494,668 - +2.5 494,668 - -0.4 494,668 - -0.5 494,668 - +2.3 494,668 - -0.9 494,668 - +0.4 494,668 - -3.5 494,668 - -1.2 494,668 - +3.6 494,668 - -1.4 494,668 - -1.4 494,668 - +3.3 494,668 - +1.6 494,668 - +1.7 494,668 - +4.8 494,668 - -0.1 494,668 - -1.4 494,752 + +4.6 494,752 + +3.5 494,752 + +2.1 494,752 + +2.5 494,752 + +3.9 494,752 + +4.5 494,752 + +2.5 494,753 - -2.3 494,753 - +3.5 494,753 - -0.6 494,753 - +4.1 494,753 - +0.1 494,754 + +4.1 494,808 + +1.7 494,839 + +2.1 494,839 + -1.4 494,839 + -2.0 494,839 + -1.1 494,839 + +0.9 494,839 + -0.5 494,840 - +2.1 494,840 - +3.5 494,840 - +0.4 494,840 - +3.6 494,840 - -2.1 494,840 - -1.2 494,840 - +1.2 494,843 + +0.1 494,843 + -1.8 494,843 + +5.0 494,844 - +3.5 494,844 - +1.2 494,844 - -1.0 494,889 - +0.4 494,889 - +0.6 495,362 + Psyr_0458 0.22 +1.1 495,362 + Psyr_0458 0.22 +2.7 495,363 - Psyr_0458 0.22 -1.2 495,388 + Psyr_0458 0.23 -1.4 495,388 + Psyr_0458 0.23 +2.1 495,389 - Psyr_0458 0.24 +3.8 495,389 - Psyr_0458 0.24 -0.3
Or see this region's nucleotide sequence