Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0434 and Psyr_0435 are separated by 1 nucleotides Psyr_0435 and Psyr_0436 overlap by 4 nucleotides Psyr_0436 and Psyr_0437 are separated by 9 nucleotides Psyr_0437 and Psyr_0438 overlap by 26 nucleotides
Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479
_0434
Psyr_0435: Psyr_0435 - membrane protein, putative, at 474,481 to 475,026
_0435
Psyr_0436: Psyr_0436 - Phosphopantetheine-binding protein, at 475,023 to 475,277
_0436
Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547
_0437
Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334
_0438
Position (kb) 474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.951 kb on + strand, within Psyr_0434 at 473.952 kb on - strand, within Psyr_0434 at 473.952 kb on - strand, within Psyr_0434 at 473.952 kb on - strand, within Psyr_0434 at 474.661 kb on - strand, within Psyr_0435 at 474.669 kb on - strand, within Psyr_0435 at 475.049 kb on - strand, within Psyr_0436 at 475.049 kb on - strand, within Psyr_0436 at 475.059 kb on + strand, within Psyr_0436 at 475.060 kb on - strand, within Psyr_0436 at 475.460 kb on + strand, within Psyr_0437 at 475.461 kb on - strand, within Psyr_0437 at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.523 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.571 kb on + strand at 475.572 kb on - strand at 475.572 kb on - strand at 475.584 kb on - strand at 475.584 kb on - strand at 475.645 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.645 kb on + strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.646 kb on - strand, within Psyr_0438 at 475.919 kb on + strand, within Psyr_0438 at 475.920 kb on - strand, within Psyr_0438
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 473,951 + Psyr_0434 0.69 -3.2 473,951 + Psyr_0434 0.69 +1.7 473,951 + Psyr_0434 0.69 -0.2 473,951 + Psyr_0434 0.69 +0.4 473,951 + Psyr_0434 0.69 +1.0 473,951 + Psyr_0434 0.69 -1.0 473,951 + Psyr_0434 0.69 +3.6 473,951 + Psyr_0434 0.69 +3.3 473,952 - Psyr_0434 0.69 +0.1 473,952 - Psyr_0434 0.69 +3.9 473,952 - Psyr_0434 0.69 -1.9 474,661 - Psyr_0435 0.33 -1.9 474,669 - Psyr_0435 0.34 +2.7 475,049 - Psyr_0436 0.10 +5.1 475,049 - Psyr_0436 0.10 +0.1 475,059 + Psyr_0436 0.14 +1.7 475,060 - Psyr_0436 0.15 +3.8 475,460 + Psyr_0437 0.66 -2.1 475,461 - Psyr_0437 0.67 -0.8 475,523 + -1.1 475,523 + -1.7 475,523 + -1.3 475,523 + +4.1 475,523 + +1.1 475,523 + +3.3 475,571 + +1.7 475,571 + +2.5 475,571 + -1.1 475,571 + -1.4 475,571 + -1.2 475,571 + +5.4 475,571 + +2.5 475,571 + +0.3 475,572 - +2.1 475,572 - -0.6 475,584 - -1.4 475,584 - -1.4 475,645 + Psyr_0438 0.15 +0.4 475,645 + Psyr_0438 0.15 +2.1 475,645 + Psyr_0438 0.15 +2.9 475,646 - Psyr_0438 0.15 -1.0 475,646 - Psyr_0438 0.15 +0.1 475,646 - Psyr_0438 0.15 +1.7 475,646 - Psyr_0438 0.15 +2.5 475,646 - Psyr_0438 0.15 +3.1 475,646 - Psyr_0438 0.15 -2.2 475,919 + Psyr_0438 0.49 +3.9 475,920 - Psyr_0438 0.49 -1.9
Or see this region's nucleotide sequence