Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0391 and Psyr_0392 are separated by 112 nucleotides Psyr_0392 and Psyr_0393 overlap by 17 nucleotides Psyr_0393 and Psyr_0394 are separated by 107 nucleotides Psyr_0394 and Psyr_0395 are separated by 66 nucleotides
Psyr_0391: Psyr_0391 - Poly granule associated, at 419,054 to 419,746
_0391
Psyr_0392: Psyr_0392 - hypothetical protein, at 419,859 to 420,164
_0392
Psyr_0393: Psyr_0393 - Protein of unknown function DUF971, at 420,148 to 420,519
_0393
Psyr_0394: Psyr_0394 - Heat shock protein HslU, at 420,627 to 421,964
_0394
Psyr_0395: Psyr_0395 - HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B, at 422,031 to 422,609
_0395
Position (kb) 420
421
422 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 419.696 kb on - strand at 419.747 kb on + strand at 419.747 kb on + strand at 419.748 kb on - strand at 419.769 kb on + strand at 419.769 kb on + strand at 419.770 kb on - strand at 419.770 kb on - strand at 419.796 kb on - strand at 419.868 kb on + strand at 419.868 kb on + strand at 419.869 kb on - strand at 419.869 kb on - strand at 419.869 kb on - strand at 419.945 kb on + strand, within Psyr_0392 at 419.946 kb on - strand, within Psyr_0392 at 419.988 kb on + strand, within Psyr_0392 at 419.988 kb on + strand, within Psyr_0392 at 419.988 kb on + strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 419.989 kb on - strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.018 kb on + strand, within Psyr_0392 at 420.019 kb on - strand, within Psyr_0392 at 420.019 kb on - strand, within Psyr_0392 at 420.019 kb on - strand, within Psyr_0392 at 420.218 kb on + strand, within Psyr_0393 at 420.219 kb on - strand, within Psyr_0393 at 420.219 kb on - strand, within Psyr_0393 at 420.219 kb on - strand, within Psyr_0393 at 420.219 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.264 kb on - strand, within Psyr_0393 at 420.320 kb on + strand, within Psyr_0393 at 420.320 kb on + strand, within Psyr_0393 at 420.321 kb on - strand, within Psyr_0393 at 420.321 kb on - strand, within Psyr_0393 at 420.321 kb on - strand, within Psyr_0393 at 420.464 kb on + strand, within Psyr_0393 at 420.493 kb on - strand at 420.493 kb on - strand at 420.540 kb on - strand at 420.540 kb on - strand at 420.612 kb on + strand at 420.613 kb on - strand at 420.613 kb on - strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.615 kb on + strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.616 kb on - strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.635 kb on + strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.636 kb on - strand at 420.637 kb on + strand at 420.637 kb on + strand at 420.680 kb on + strand at 420.688 kb on + strand at 420.688 kb on + strand at 420.688 kb on + strand at 420.689 kb on - strand at 420.689 kb on - strand at 420.908 kb on - strand, within Psyr_0394 at 421.175 kb on + strand, within Psyr_0394 at 421.175 kb on + strand, within Psyr_0394 at 421.175 kb on + strand, within Psyr_0394 at 421.176 kb on - strand, within Psyr_0394 at 421.680 kb on + strand, within Psyr_0394 at 421.681 kb on - strand, within Psyr_0394 at 421.696 kb on + strand, within Psyr_0394 at 421.697 kb on - strand, within Psyr_0394 at 421.825 kb on - strand, within Psyr_0394 at 421.825 kb on - strand, within Psyr_0394 at 421.919 kb on + strand at 421.920 kb on - strand at 421.985 kb on + strand at 422.446 kb on + strand, within Psyr_0395 at 422.447 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.458 kb on - strand, within Psyr_0395 at 422.528 kb on + strand, within Psyr_0395 at 422.628 kb on - strand at 422.665 kb on + strand at 422.666 kb on - strand at 422.666 kb on - strand at 422.687 kb on + strand at 422.842 kb on - strand at 422.842 kb on - strand at 422.842 kb on - strand at 422.901 kb on - strand at 422.901 kb on - strand at 422.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 419,696 - +2.7 419,747 + +1.6 419,747 + +0.5 419,748 - -0.9 419,769 + -2.1 419,769 + +1.1 419,770 - -0.4 419,770 - +0.2 419,796 - +3.7 419,868 + +5.2 419,868 + +4.6 419,869 - +1.7 419,869 - +4.3 419,869 - +3.6 419,945 + Psyr_0392 0.28 -0.2 419,946 - Psyr_0392 0.28 +0.1 419,988 + Psyr_0392 0.42 +1.4 419,988 + Psyr_0392 0.42 -1.3 419,988 + Psyr_0392 0.42 +2.7 419,989 - Psyr_0392 0.42 -0.2 419,989 - Psyr_0392 0.42 -2.5 419,989 - Psyr_0392 0.42 +0.0 420,018 + Psyr_0392 0.52 +2.9 420,018 + Psyr_0392 0.52 +3.8 420,018 + Psyr_0392 0.52 -0.0 420,018 + Psyr_0392 0.52 +0.8 420,018 + Psyr_0392 0.52 +3.9 420,018 + Psyr_0392 0.52 -1.0 420,019 - Psyr_0392 0.52 +2.7 420,019 - Psyr_0392 0.52 +3.1 420,019 - Psyr_0392 0.52 -1.7 420,218 + Psyr_0393 0.19 -3.8 420,219 - Psyr_0393 0.19 +0.1 420,219 - Psyr_0393 0.19 +3.5 420,219 - Psyr_0393 0.19 +0.1 420,219 - Psyr_0393 0.19 +1.7 420,264 - Psyr_0393 0.31 -0.6 420,264 - Psyr_0393 0.31 +2.5 420,264 - Psyr_0393 0.31 +2.5 420,264 - Psyr_0393 0.31 +1.7 420,320 + Psyr_0393 0.46 +0.1 420,320 + Psyr_0393 0.46 +0.9 420,321 - Psyr_0393 0.47 -0.8 420,321 - Psyr_0393 0.47 -1.5 420,321 - Psyr_0393 0.47 -0.7 420,464 + Psyr_0393 0.85 +0.1 420,493 - +2.1 420,493 - +2.1 420,540 - +2.5 420,540 - -1.3 420,612 + -1.5 420,613 - -1.5 420,613 - +0.5 420,615 + +0.1 420,615 + -0.7 420,615 + -0.7 420,615 + -1.2 420,615 + +1.4 420,616 - +4.1 420,616 - -0.8 420,616 - +3.3 420,616 - -0.2 420,616 - +1.1 420,616 - -2.6 420,635 + -2.8 420,635 + +2.1 420,635 + -4.1 420,635 + +2.1 420,636 - +3.1 420,636 - +1.7 420,636 - -1.5 420,636 - +0.5 420,637 + +3.1 420,637 + -1.0 420,680 + -0.8 420,688 + -2.7 420,688 + -2.8 420,688 + +0.1 420,689 - +1.7 420,689 - -3.8 420,908 - Psyr_0394 0.21 -2.7 421,175 + Psyr_0394 0.41 +0.1 421,175 + Psyr_0394 0.41 +0.1 421,175 + Psyr_0394 0.41 -3.2 421,176 - Psyr_0394 0.41 -2.5 421,680 + Psyr_0394 0.79 +0.1 421,681 - Psyr_0394 0.79 -0.8 421,696 + Psyr_0394 0.80 -2.5 421,697 - Psyr_0394 0.80 +1.1 421,825 - Psyr_0394 0.90 -2.5 421,825 - Psyr_0394 0.90 +2.4 421,919 + +2.9 421,920 - -5.2 421,985 + -2.5 422,446 + Psyr_0395 0.72 -0.6 422,447 - Psyr_0395 0.72 +1.1 422,458 - Psyr_0395 0.74 -0.3 422,458 - Psyr_0395 0.74 +0.1 422,458 - Psyr_0395 0.74 -2.2 422,528 + Psyr_0395 0.86 +2.1 422,628 - -3.9 422,665 + -1.3 422,666 - +3.3 422,666 - +0.8 422,687 + +1.1 422,842 - +1.4 422,842 - -0.4 422,842 - +0.7 422,901 - +0.1 422,901 - -0.9 422,932 - -1.2
Or see this region's nucleotide sequence