Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0367

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0365 and Psyr_0366 overlap by 4 nucleotidesPsyr_0366 and Psyr_0367 are separated by 93 nucleotidesPsyr_0367 and Psyr_0368 are separated by 180 nucleotidesPsyr_0368 and Psyr_0369 are separated by 3 nucleotides Psyr_0365: Psyr_0365 - protein of unknown function DUF886, at 389,816 to 390,412 _0365 Psyr_0366: Psyr_0366 - transcriptional regulator, GntR family, at 390,409 to 391,230 _0366 Psyr_0367: Psyr_0367 - formimidoylglutamate deiminase, at 391,324 to 392,688 _0367 Psyr_0368: Psyr_0368 - lipoprotein Blc, at 392,869 to 393,447 _0368 Psyr_0369: Psyr_0369 - lipoprotein, putative, at 393,451 to 393,705 _0369 Position (kb) 391 392 393Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 390.417 kb on + strandat 390.495 kb on + strand, within Psyr_0366at 390.495 kb on + strand, within Psyr_0366at 390.620 kb on + strand, within Psyr_0366at 390.621 kb on - strand, within Psyr_0366at 390.621 kb on - strand, within Psyr_0366at 390.659 kb on + strand, within Psyr_0366at 390.722 kb on + strand, within Psyr_0366at 390.976 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.094 kb on + strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.095 kb on - strand, within Psyr_0366at 391.232 kb on - strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.284 kb on + strandat 391.285 kb on - strandat 391.285 kb on - strandat 391.285 kb on - strandat 391.287 kb on - strandat 391.287 kb on - strandat 391.287 kb on - strandat 391.290 kb on + strandat 391.290 kb on + strandat 391.290 kb on + strandat 391.291 kb on - strandat 391.291 kb on - strandat 391.291 kb on - strandat 391.292 kb on + strandat 391.293 kb on - strandat 391.294 kb on + strandat 391.301 kb on + strandat 391.352 kb on + strandat 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.579 kb on + strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strand, within Psyr_0367at 391.580 kb on - strandat 391.580 kb on - strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.636 kb on + strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.637 kb on - strand, within Psyr_0367at 391.684 kb on + strand, within Psyr_0367at 391.684 kb on + strand, within Psyr_0367at 391.685 kb on - strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.798 kb on + strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.799 kb on - strand, within Psyr_0367at 391.851 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.870 kb on + strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.871 kb on - strand, within Psyr_0367at 391.935 kb on - strand, within Psyr_0367at 391.973 kb on + strand, within Psyr_0367at 391.973 kb on + strand, within Psyr_0367at 391.974 kb on - strand, within Psyr_0367at 392.092 kb on + strand, within Psyr_0367at 392.093 kb on - strand, within Psyr_0367at 392.196 kb on - strand, within Psyr_0367at 392.248 kb on + strand, within Psyr_0367at 392.248 kb on + strand, within Psyr_0367at 392.248 kb on + strand, within Psyr_0367at 392.248 kb on + strand, within Psyr_0367at 392.249 kb on - strand, within Psyr_0367at 392.249 kb on - strand, within Psyr_0367at 392.249 kb on - strand, within Psyr_0367at 392.332 kb on + strand, within Psyr_0367at 392.406 kb on - strand, within Psyr_0367at 392.407 kb on + strand, within Psyr_0367at 392.407 kb on + strand, within Psyr_0367at 392.407 kb on + strand, within Psyr_0367at 392.407 kb on + strand, within Psyr_0367at 392.407 kb on + strand, within Psyr_0367at 392.408 kb on - strand, within Psyr_0367at 392.408 kb on - strand, within Psyr_0367at 392.408 kb on - strand, within Psyr_0367at 392.408 kb on - strand, within Psyr_0367at 392.512 kb on + strand, within Psyr_0367at 392.512 kb on + strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.513 kb on - strand, within Psyr_0367at 392.930 kb on + strand, within Psyr_0368at 392.931 kb on - strand, within Psyr_0368at 392.991 kb on + strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.327 kb on - strand, within Psyr_0368at 393.430 kb on + strandat 393.452 kb on + strandat 393.453 kb on - strandat 393.453 kb on - strandat 393.497 kb on + strand, within Psyr_0369at 393.498 kb on - strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.511 kb on - strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.682 kb on + strandat 393.683 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
390,417 + +4.2
390,495 + Psyr_0366 0.10 -3.8
390,495 + Psyr_0366 0.10 -0.3
390,620 + Psyr_0366 0.26 -1.0
390,621 - Psyr_0366 0.26 +3.5
390,621 - Psyr_0366 0.26 +2.7
390,659 + Psyr_0366 0.30 -2.6
390,722 + Psyr_0366 0.38 -2.6
390,976 + Psyr_0366 0.69 -0.3
391,094 + Psyr_0366 0.83 -0.8
391,094 + Psyr_0366 0.83 +3.1
391,094 + Psyr_0366 0.83 -1.1
391,095 - Psyr_0366 0.83 -0.1
391,095 - Psyr_0366 0.83 +2.5
391,095 - Psyr_0366 0.83 -0.7
391,232 - +0.4
391,284 + +3.7
391,284 + +0.8
391,284 + +1.0
391,284 + -2.3
391,284 + +0.1
391,285 - -0.2
391,285 - +4.4
391,285 - +2.9
391,287 - -1.3
391,287 - -1.4
391,287 - +0.1
391,290 + -0.1
391,290 + -1.7
391,290 + -1.5
391,291 - -1.5
391,291 - +0.3
391,291 - +3.9
391,292 + -1.8
391,293 - +1.1
391,294 + -1.9
391,301 + +0.7
391,352 + +3.7
391,579 + Psyr_0367 0.19 -0.1
391,579 + Psyr_0367 0.19 +0.8
391,579 + Psyr_0367 0.19 +3.9
391,579 + Psyr_0367 0.19 +2.3
391,579 + Psyr_0367 0.19 +0.2
391,580 - Psyr_0367 0.19 +2.9
391,580 - Psyr_0367 0.19 +1.7
391,580 - Psyr_0367 0.19 +4.5
391,580 - Psyr_0367 0.19 -0.2
391,580 - Psyr_0367 0.19 -3.3
391,580 - +2.1
391,580 - Psyr_0367 0.19 +3.1
391,636 + Psyr_0367 0.23 -1.2
391,636 + Psyr_0367 0.23 +1.1
391,636 + Psyr_0367 0.23 +2.7
391,636 + Psyr_0367 0.23 -1.5
391,636 + Psyr_0367 0.23 -0.1
391,636 + Psyr_0367 0.23 -0.2
391,636 + Psyr_0367 0.23 -2.0
391,637 - Psyr_0367 0.23 -0.1
391,637 - Psyr_0367 0.23 -1.2
391,637 - Psyr_0367 0.23 +3.9
391,637 - Psyr_0367 0.23 +3.6
391,637 - Psyr_0367 0.23 +1.1
391,637 - Psyr_0367 0.23 -1.1
391,637 - Psyr_0367 0.23 +3.1
391,684 + Psyr_0367 0.26 +3.3
391,684 + Psyr_0367 0.26 -0.1
391,685 - Psyr_0367 0.26 -0.2
391,798 + Psyr_0367 0.35 +1.6
391,798 + Psyr_0367 0.35 -1.7
391,798 + Psyr_0367 0.35 -0.3
391,799 - Psyr_0367 0.35 +2.7
391,799 - Psyr_0367 0.35 +2.1
391,799 - Psyr_0367 0.35 -4.4
391,799 - Psyr_0367 0.35 +1.7
391,851 + Psyr_0367 0.39 +1.3
391,870 + Psyr_0367 0.40 +0.5
391,870 + Psyr_0367 0.40 +2.9
391,870 + Psyr_0367 0.40 -3.6
391,871 - Psyr_0367 0.40 -0.3
391,871 - Psyr_0367 0.40 -1.7
391,871 - Psyr_0367 0.40 +0.5
391,871 - Psyr_0367 0.40 -0.1
391,935 - Psyr_0367 0.45 +3.7
391,973 + Psyr_0367 0.48 +0.6
391,973 + Psyr_0367 0.48 +0.6
391,974 - Psyr_0367 0.48 +3.5
392,092 + Psyr_0367 0.56 -1.9
392,093 - Psyr_0367 0.56 +3.9
392,196 - Psyr_0367 0.64 +3.5
392,248 + Psyr_0367 0.68 -3.4
392,248 + Psyr_0367 0.68 +0.5
392,248 + Psyr_0367 0.68 +1.7
392,248 + Psyr_0367 0.68 +1.0
392,249 - Psyr_0367 0.68 -0.0
392,249 - Psyr_0367 0.68 -0.7
392,249 - Psyr_0367 0.68 +3.7
392,332 + Psyr_0367 0.74 -1.4
392,406 - Psyr_0367 0.79 +4.0
392,407 + Psyr_0367 0.79 -0.2
392,407 + Psyr_0367 0.79 -1.3
392,407 + Psyr_0367 0.79 -0.6
392,407 + Psyr_0367 0.79 -0.1
392,407 + Psyr_0367 0.79 -0.7
392,408 - Psyr_0367 0.79 -1.7
392,408 - Psyr_0367 0.79 -0.3
392,408 - Psyr_0367 0.79 -0.4
392,408 - Psyr_0367 0.79 -2.6
392,512 + Psyr_0367 0.87 -0.9
392,512 + Psyr_0367 0.87 -0.2
392,513 - Psyr_0367 0.87 -0.8
392,513 - Psyr_0367 0.87 +3.1
392,513 - Psyr_0367 0.87 +0.5
392,930 + Psyr_0368 0.11 +4.3
392,931 - Psyr_0368 0.11 -2.4
392,991 + Psyr_0368 0.21 +3.3
392,992 - Psyr_0368 0.21 -0.9
392,992 - Psyr_0368 0.21 +3.1
393,011 + Psyr_0368 0.25 +2.1
393,011 + Psyr_0368 0.25 -1.7
393,011 + Psyr_0368 0.25 +4.2
393,011 + Psyr_0368 0.25 -2.9
393,012 - Psyr_0368 0.25 -1.9
393,012 - Psyr_0368 0.25 -1.0
393,249 + Psyr_0368 0.66 +4.2
393,249 + Psyr_0368 0.66 -0.9
393,249 + Psyr_0368 0.66 -0.8
393,249 + Psyr_0368 0.66 -1.9
393,249 + Psyr_0368 0.66 +2.7
393,249 + Psyr_0368 0.66 +1.7
393,249 + Psyr_0368 0.66 +2.5
393,249 + Psyr_0368 0.66 -0.9
393,249 + Psyr_0368 0.66 +1.1
393,249 + Psyr_0368 0.66 -1.9
393,249 + Psyr_0368 0.66 +1.1
393,250 - Psyr_0368 0.66 -2.5
393,250 - Psyr_0368 0.66 +3.8
393,250 - Psyr_0368 0.66 -0.8
393,250 - Psyr_0368 0.66 -1.4
393,250 - Psyr_0368 0.66 +1.4
393,250 - Psyr_0368 0.66 -1.6
393,250 - Psyr_0368 0.66 +3.1
393,250 - Psyr_0368 0.66 -0.9
393,250 - Psyr_0368 0.66 -0.6
393,250 - Psyr_0368 0.66 +0.1
393,250 - Psyr_0368 0.66 +5.0
393,327 - Psyr_0368 0.79 -0.9
393,430 + -0.3
393,452 + -2.3
393,453 - +1.7
393,453 - +2.9
393,497 + Psyr_0369 0.18 +0.5
393,498 - Psyr_0369 0.18 +0.5
393,510 + Psyr_0369 0.23 +0.5
393,510 + Psyr_0369 0.23 +3.9
393,511 - Psyr_0369 0.24 -0.4
393,629 + Psyr_0369 0.70 -3.4
393,629 + Psyr_0369 0.70 +0.2
393,682 + -0.9
393,683 - +2.5

Or see this region's nucleotide sequence