Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0260

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0259 and Psyr_0260 are separated by 255 nucleotidesPsyr_0260 and Psyr_0261 are separated by 224 nucleotidesPsyr_0261 and Psyr_0262 are separated by 228 nucleotides Psyr_0259: Psyr_0259 - Osmolarity sensor protein envZ, at 275,025 to 276,347 _0259 Psyr_0260: Psyr_0260 - conserved hypothetical protein, at 276,603 to 277,070 _0260 Psyr_0261: Psyr_0261 - conserved hypothetical protein, at 277,295 to 277,582 _0261 Psyr_0262: Psyr_0262 - Transport-associated protein, at 277,811 to 278,650 _0262 Position (kb) 276 277 278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 276.072 kb on + strand, within Psyr_0259at 276.073 kb on - strand, within Psyr_0259at 276.076 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.099 kb on + strand, within Psyr_0259at 276.100 kb on - strand, within Psyr_0259at 276.236 kb on + strandat 276.305 kb on - strandat 276.345 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.373 kb on + strandat 276.374 kb on - strandat 276.374 kb on - strandat 276.374 kb on - strandat 276.375 kb on + strandat 276.375 kb on + strandat 276.376 kb on - strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.470 kb on + strandat 276.479 kb on + strandat 276.486 kb on - strandat 276.486 kb on - strandat 276.538 kb on + strandat 276.539 kb on - strandat 276.668 kb on + strand, within Psyr_0260at 276.668 kb on + strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.683 kb on - strand, within Psyr_0260at 276.749 kb on - strand, within Psyr_0260at 276.749 kb on - strand, within Psyr_0260at 276.803 kb on + strand, within Psyr_0260at 276.804 kb on - strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.835 kb on + strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 276.836 kb on - strand, within Psyr_0260at 277.071 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.187 kb on + strandat 277.243 kb on + strandat 277.244 kb on - strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.263 kb on + strandat 277.267 kb on - strandat 277.331 kb on + strand, within Psyr_0261at 277.331 kb on + strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.332 kb on - strand, within Psyr_0261at 277.393 kb on + strand, within Psyr_0261at 277.404 kb on + strand, within Psyr_0261at 277.552 kb on + strand, within Psyr_0261at 277.552 kb on + strand, within Psyr_0261at 277.553 kb on - strand, within Psyr_0261at 277.567 kb on + strandat 277.567 kb on + strandat 277.567 kb on + strandat 277.568 kb on - strandat 277.568 kb on - strandat 277.736 kb on - strandat 277.874 kb on - strandat 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.992 kb on + strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262at 277.993 kb on - strand, within Psyr_0262

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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276,072 + Psyr_0259 0.79 -3.3
276,073 - Psyr_0259 0.79 +0.2
276,076 + Psyr_0259 0.79 +0.2
276,099 + Psyr_0259 0.81 +1.2
276,099 + Psyr_0259 0.81 -1.5
276,099 + Psyr_0259 0.81 -2.1
276,099 + Psyr_0259 0.81 +0.2
276,099 + Psyr_0259 0.81 -2.3
276,100 - Psyr_0259 0.81 +0.2
276,236 + -2.6
276,305 - +3.0
276,345 + +0.8
276,373 + -2.4
276,373 + +3.0
276,373 + -0.2
276,373 + +0.2
276,373 + +3.0
276,373 + -1.9
276,374 - -1.7
276,374 - +1.2
276,374 - +0.1
276,375 + -1.2
276,375 + -0.8
276,376 - +0.2
276,470 + -1.5
276,470 + +3.8
276,470 + -0.3
276,470 + +3.8
276,470 + +2.2
276,479 + +1.9
276,486 - -0.9
276,486 - +1.8
276,538 + +3.2
276,539 - +0.4
276,668 + Psyr_0260 0.14 +3.8
276,668 + Psyr_0260 0.14 +0.3
276,683 - Psyr_0260 0.17 +4.3
276,683 - Psyr_0260 0.17 +0.7
276,683 - Psyr_0260 0.17 +4.0
276,749 - Psyr_0260 0.31 -2.6
276,749 - Psyr_0260 0.31 -1.3
276,803 + Psyr_0260 0.43 +0.1
276,804 - Psyr_0260 0.43 +0.3
276,835 + Psyr_0260 0.50 +1.2
276,835 + Psyr_0260 0.50 -2.0
276,835 + Psyr_0260 0.50 +0.4
276,835 + Psyr_0260 0.50 -4.3
276,835 + Psyr_0260 0.50 -0.8
276,835 + Psyr_0260 0.50 +2.5
276,835 + Psyr_0260 0.50 -1.0
276,835 + Psyr_0260 0.50 -0.2
276,835 + Psyr_0260 0.50 +4.6
276,836 - Psyr_0260 0.50 +1.2
276,836 - Psyr_0260 0.50 -0.4
276,836 - Psyr_0260 0.50 +1.8
276,836 - Psyr_0260 0.50 -0.9
276,836 - Psyr_0260 0.50 +1.7
276,836 - Psyr_0260 0.50 +0.5
276,836 - Psyr_0260 0.50 +3.4
276,836 - Psyr_0260 0.50 -1.1
276,836 - Psyr_0260 0.50 +4.0
277,071 + -3.5
277,187 + -0.4
277,187 + +0.2
277,187 + +3.0
277,243 + +0.7
277,244 - -1.7
277,263 + +3.8
277,263 + +0.2
277,263 + +4.0
277,267 - -0.6
277,331 + Psyr_0261 0.12 -1.5
277,331 + Psyr_0261 0.12 +0.3
277,332 - Psyr_0261 0.13 +1.0
277,332 - Psyr_0261 0.13 +0.6
277,332 - Psyr_0261 0.13 -0.5
277,393 + Psyr_0261 0.34 +0.8
277,404 + Psyr_0261 0.38 -1.9
277,552 + Psyr_0261 0.89 +4.5
277,552 + Psyr_0261 0.89 +2.2
277,553 - Psyr_0261 0.90 +1.2
277,567 + -2.8
277,567 + +2.5
277,567 + +1.8
277,568 - -2.6
277,568 - -1.1
277,736 - -1.7
277,874 - +0.2
277,992 + Psyr_0262 0.22 +1.4
277,992 + Psyr_0262 0.22 +1.1
277,992 + Psyr_0262 0.22 -1.8
277,992 + Psyr_0262 0.22 +4.4
277,992 + Psyr_0262 0.22 +1.5
277,992 + Psyr_0262 0.22 -0.8
277,992 + Psyr_0262 0.22 +0.3
277,993 - Psyr_0262 0.22 +3.2
277,993 - Psyr_0262 0.22 -3.1
277,993 - Psyr_0262 0.22 -2.1
277,993 - Psyr_0262 0.22 +0.1
277,993 - Psyr_0262 0.22 -1.7

Or see this region's nucleotide sequence