Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0230

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0229 and Psyr_0230 are separated by 72 nucleotidesPsyr_0230 and Psyr_0231 are separated by 175 nucleotidesPsyr_0231 and Psyr_0232 are separated by 2 nucleotides Psyr_0229: Psyr_0229 - Phospholipase D/Transphosphatidylase, at 243,182 to 244,762 _0229 Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256 _0230 Psyr_0231: Psyr_0231 - conserved hypothetical protein, at 246,432 to 246,683 _0231 Psyr_0232: Psyr_0232 - gamma-glutamylputrescine oxidase, at 246,686 to 247,999 _0232 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 243.860 kb on + strand, within Psyr_0229at 243.861 kb on - strand, within Psyr_0229at 243.861 kb on - strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.946 kb on - strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.096 kb on - strand, within Psyr_0229at 244.188 kb on + strand, within Psyr_0229at 244.188 kb on + strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.510 kb on - strand, within Psyr_0229at 244.510 kb on - strand, within Psyr_0229at 244.756 kb on + strandat 244.756 kb on + strandat 244.801 kb on + strandat 244.802 kb on - strandat 244.945 kb on - strandat 244.966 kb on + strandat 244.967 kb on - strandat 245.100 kb on + strand, within Psyr_0230at 245.101 kb on - strand, within Psyr_0230at 245.101 kb on - strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.388 kb on + strand, within Psyr_0230at 245.388 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.395 kb on - strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.820 kb on + strand, within Psyr_0230at 245.820 kb on + strand, within Psyr_0230at 245.821 kb on - strand, within Psyr_0230at 245.835 kb on + strand, within Psyr_0230at 245.995 kb on + strand, within Psyr_0230at 246.067 kb on - strand, within Psyr_0230at 246.137 kb on - strandat 246.137 kb on - strandat 246.199 kb on - strandat 246.199 kb on - strandat 246.199 kb on - strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.247 kb on - strandat 246.261 kb on + strandat 246.310 kb on - strandat 246.311 kb on + strandat 246.312 kb on - strandat 246.312 kb on - strandat 246.312 kb on - strandat 246.350 kb on + strandat 246.351 kb on - strandat 246.562 kb on - strand, within Psyr_0231at 246.562 kb on - strand, within Psyr_0231at 246.562 kb on - strand, within Psyr_0231at 246.876 kb on + strand, within Psyr_0232at 246.876 kb on + strand, within Psyr_0232at 246.877 kb on - strand, within Psyr_0232at 246.877 kb on - strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.889 kb on - strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.920 kb on + strand, within Psyr_0232at 246.921 kb on - strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.107 kb on + strand, within Psyr_0232at 247.107 kb on + strand, within Psyr_0232at 247.108 kb on - strand, within Psyr_0232at 247.108 kb on - strand, within Psyr_0232at 247.110 kb on + strand, within Psyr_0232at 247.110 kb on + strand, within Psyr_0232at 247.111 kb on - strand, within Psyr_0232at 247.137 kb on - strand, within Psyr_0232at 247.137 kb on - strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
243,860 + Psyr_0229 0.43 +1.2
243,861 - Psyr_0229 0.43 +1.8
243,861 - Psyr_0229 0.43 -0.2
243,894 + Psyr_0229 0.45 -1.6
243,894 + Psyr_0229 0.45 -0.1
243,894 + Psyr_0229 0.45 +0.2
243,894 + Psyr_0229 0.45 -1.6
243,895 - Psyr_0229 0.45 -0.4
243,895 - Psyr_0229 0.45 +0.4
243,895 - Psyr_0229 0.45 -1.0
243,895 - Psyr_0229 0.45 -2.5
243,895 - Psyr_0229 0.45 -0.3
243,945 + Psyr_0229 0.48 -0.1
243,945 + Psyr_0229 0.48 +4.5
243,945 + Psyr_0229 0.48 +2.0
243,945 + Psyr_0229 0.48 +0.5
243,946 - Psyr_0229 0.48 +4.5
243,963 + Psyr_0229 0.49 +2.8
243,963 + Psyr_0229 0.49 +2.8
243,963 + Psyr_0229 0.49 +0.9
243,964 - Psyr_0229 0.49 -0.8
243,964 - Psyr_0229 0.49 -2.4
243,964 - Psyr_0229 0.49 -1.4
243,964 - Psyr_0229 0.49 +3.7
244,053 + Psyr_0229 0.55 +2.8
244,053 + Psyr_0229 0.55 -0.3
244,053 + Psyr_0229 0.55 +3.0
244,053 + Psyr_0229 0.55 +0.5
244,054 - Psyr_0229 0.55 +0.0
244,054 - Psyr_0229 0.55 -0.5
244,054 - Psyr_0229 0.55 -1.8
244,054 - Psyr_0229 0.55 +0.2
244,054 - Psyr_0229 0.55 +0.9
244,054 - Psyr_0229 0.55 +0.1
244,096 - Psyr_0229 0.58 -0.5
244,188 + Psyr_0229 0.64 -1.8
244,188 + Psyr_0229 0.64 +2.2
244,189 - Psyr_0229 0.64 -1.7
244,189 - Psyr_0229 0.64 -0.7
244,189 - Psyr_0229 0.64 +0.9
244,506 + Psyr_0229 0.84 -1.4
244,506 + Psyr_0229 0.84 -1.3
244,506 + Psyr_0229 0.84 -1.4
244,506 + Psyr_0229 0.84 -1.7
244,506 + Psyr_0229 0.84 +3.2
244,506 + Psyr_0229 0.84 +3.5
244,506 + Psyr_0229 0.84 -2.1
244,506 + Psyr_0229 0.84 -1.2
244,506 + Psyr_0229 0.84 -3.6
244,506 + Psyr_0229 0.84 -0.1
244,506 + Psyr_0229 0.84 +1.2
244,506 + Psyr_0229 0.84 +3.4
244,506 + Psyr_0229 0.84 -0.2
244,506 + Psyr_0229 0.84 -0.2
244,506 + Psyr_0229 0.84 +2.2
244,506 + Psyr_0229 0.84 -1.3
244,506 + Psyr_0229 0.84 -0.6
244,506 + Psyr_0229 0.84 -1.2
244,506 + Psyr_0229 0.84 -0.8
244,506 + Psyr_0229 0.84 -0.8
244,506 + Psyr_0229 0.84 +1.2
244,506 + Psyr_0229 0.84 -0.4
244,506 + Psyr_0229 0.84 -0.8
244,507 - Psyr_0229 0.84 +0.6
244,507 - Psyr_0229 0.84 +3.8
244,507 - Psyr_0229 0.84 -1.9
244,507 - Psyr_0229 0.84 -0.8
244,507 - Psyr_0229 0.84 +1.2
244,507 - Psyr_0229 0.84 +1.6
244,507 - Psyr_0229 0.84 +1.5
244,507 - Psyr_0229 0.84 +1.3
244,507 - Psyr_0229 0.84 -0.8
244,507 - Psyr_0229 0.84 -1.0
244,507 - Psyr_0229 0.84 -2.0
244,507 - Psyr_0229 0.84 -0.3
244,507 - Psyr_0229 0.84 -2.4
244,507 - Psyr_0229 0.84 -2.6
244,507 - Psyr_0229 0.84 +0.7
244,507 - Psyr_0229 0.84 +3.4
244,507 - Psyr_0229 0.84 +4.3
244,507 - Psyr_0229 0.84 -1.8
244,507 - Psyr_0229 0.84 +4.3
244,507 - Psyr_0229 0.84 +3.0
244,507 - Psyr_0229 0.84 +0.3
244,507 - Psyr_0229 0.84 -2.3
244,507 - Psyr_0229 0.84 +0.1
244,507 - Psyr_0229 0.84 -0.9
244,509 + Psyr_0229 0.84 -0.7
244,509 + Psyr_0229 0.84 -0.1
244,509 + Psyr_0229 0.84 +2.7
244,510 - Psyr_0229 0.84 -2.6
244,510 - Psyr_0229 0.84 -1.6
244,756 + +0.6
244,756 + +0.2
244,801 + -0.6
244,802 - +0.5
244,945 - -0.7
244,966 + -0.2
244,967 - -2.7
245,100 + Psyr_0230 0.19 -0.9
245,101 - Psyr_0230 0.19 -1.0
245,101 - Psyr_0230 0.19 -0.9
245,175 + Psyr_0230 0.24 -0.9
245,175 + Psyr_0230 0.24 +0.9
245,175 + Psyr_0230 0.24 +1.8
245,244 + Psyr_0230 0.29 +0.2
245,244 + Psyr_0230 0.29 -0.9
245,244 + Psyr_0230 0.29 -0.3
245,244 + Psyr_0230 0.29 +2.5
245,244 + Psyr_0230 0.29 -1.3
245,244 + Psyr_0230 0.29 -2.7
245,244 + Psyr_0230 0.29 -0.4
245,244 + Psyr_0230 0.29 -2.1
245,244 + Psyr_0230 0.29 -0.3
245,245 - Psyr_0230 0.29 -2.0
245,245 - Psyr_0230 0.29 -0.8
245,245 - Psyr_0230 0.29 -1.8
245,388 + Psyr_0230 0.39 +3.4
245,388 + Psyr_0230 0.39 +2.5
245,394 + Psyr_0230 0.39 -1.7
245,394 + Psyr_0230 0.39 -1.0
245,394 + Psyr_0230 0.39 -0.1
245,395 - Psyr_0230 0.39 +3.2
245,409 + Psyr_0230 0.40 +1.8
245,409 + Psyr_0230 0.40 +4.2
245,409 + Psyr_0230 0.40 +2.2
245,409 + Psyr_0230 0.40 +4.1
245,409 + Psyr_0230 0.40 -1.1
245,409 + Psyr_0230 0.40 +0.2
245,410 - Psyr_0230 0.40 +3.0
245,410 - Psyr_0230 0.40 -1.4
245,410 - Psyr_0230 0.40 +0.2
245,410 - Psyr_0230 0.40 +0.6
245,410 - Psyr_0230 0.40 +3.7
245,410 - Psyr_0230 0.40 +2.8
245,490 + Psyr_0230 0.46 +0.7
245,490 + Psyr_0230 0.46 +1.8
245,490 + Psyr_0230 0.46 +3.5
245,491 - Psyr_0230 0.46 -2.3
245,491 - Psyr_0230 0.46 -1.4
245,491 - Psyr_0230 0.46 -2.5
245,820 + Psyr_0230 0.69 -0.8
245,820 + Psyr_0230 0.69 -1.1
245,821 - Psyr_0230 0.69 -1.9
245,835 + Psyr_0230 0.70 -1.2
245,995 + Psyr_0230 0.82 -0.3
246,067 - Psyr_0230 0.87 +4.5
246,137 - +4.3
246,137 - +2.8
246,199 - -1.7
246,199 - -0.7
246,199 - -0.7
246,246 + -1.3
246,246 + -2.5
246,246 + -2.6
246,246 + -0.9
246,246 + +2.5
246,247 - -1.5
246,261 + -1.2
246,310 - -0.1
246,311 + -0.8
246,312 - +0.3
246,312 - +0.5
246,312 - -1.4
246,350 + -0.5
246,351 - +2.2
246,562 - Psyr_0231 0.52 +0.2
246,562 - Psyr_0231 0.52 -1.1
246,562 - Psyr_0231 0.52 -1.4
246,876 + Psyr_0232 0.14 -0.1
246,876 + Psyr_0232 0.14 +3.4
246,877 - Psyr_0232 0.15 +0.2
246,877 - Psyr_0232 0.15 -1.5
246,888 + Psyr_0232 0.15 -0.2
246,888 + Psyr_0232 0.15 +0.2
246,888 + Psyr_0232 0.15 -0.6
246,889 - Psyr_0232 0.15 +4.2
246,893 + Psyr_0232 0.16 +0.2
246,893 + Psyr_0232 0.16 +2.8
246,893 + Psyr_0232 0.16 +3.7
246,893 + Psyr_0232 0.16 +3.0
246,893 + Psyr_0232 0.16 -1.5
246,893 + Psyr_0232 0.16 -0.4
246,893 + Psyr_0232 0.16 -0.6
246,894 - Psyr_0232 0.16 -0.4
246,894 - Psyr_0232 0.16 -0.6
246,894 - Psyr_0232 0.16 -2.2
246,894 - Psyr_0232 0.16 -0.1
246,894 - Psyr_0232 0.16 -1.8
246,894 - Psyr_0232 0.16 -0.7
246,894 - Psyr_0232 0.16 -1.4
246,920 + Psyr_0232 0.18 +0.2
246,921 - Psyr_0232 0.18 +0.0
247,026 + Psyr_0232 0.26 +3.0
247,026 + Psyr_0232 0.26 +4.1
247,026 + Psyr_0232 0.26 +1.8
247,027 - Psyr_0232 0.26 -1.5
247,027 - Psyr_0232 0.26 -0.5
247,027 - Psyr_0232 0.26 +3.0
247,107 + Psyr_0232 0.32 +0.2
247,107 + Psyr_0232 0.32 +2.2
247,108 - Psyr_0232 0.32 -0.8
247,108 - Psyr_0232 0.32 -1.3
247,110 + Psyr_0232 0.32 +3.0
247,110 + Psyr_0232 0.32 +4.7
247,111 - Psyr_0232 0.32 -2.3
247,137 - Psyr_0232 0.34 -0.2
247,137 - Psyr_0232 0.34 +3.5
247,203 + Psyr_0232 0.39 -1.3
247,203 + Psyr_0232 0.39 -2.7
247,203 + Psyr_0232 0.39 +4.4
247,203 + Psyr_0232 0.39 +4.7
247,203 + Psyr_0232 0.39 -2.5
247,204 - Psyr_0232 0.39 -1.5
247,204 - Psyr_0232 0.39 +1.2
247,204 - Psyr_0232 0.39 +4.3
247,204 - Psyr_0232 0.39 +2.2
247,204 - Psyr_0232 0.39 +0.4
247,204 - Psyr_0232 0.39 +1.2
247,204 - Psyr_0232 0.39 -1.8
247,204 - Psyr_0232 0.39 +1.2
247,204 - Psyr_0232 0.39 -0.2

Or see this region's nucleotide sequence