Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0198 and Psyr_0199 are separated by 296 nucleotides Psyr_0199 and Psyr_0200 are separated by 62 nucleotides
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Psyr_0199: Psyr_0199 - Glutathione-dependent formaldehyde-activating, GFA, at 213,512 to 213,913
_0199
Psyr_0200: Psyr_0200 - conserved hypothetical protein, at 213,976 to 215,373
_0200
Position (kb) 213
214 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 212.633 kb on - strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.638 kb on + strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.639 kb on - strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.830 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.863 kb on + strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 212.864 kb on - strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.059 kb on + strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.185 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.235 kb on + strand at 213.235 kb on + strand at 213.236 kb on - strand at 213.236 kb on - strand at 213.281 kb on - strand at 213.343 kb on + strand at 213.343 kb on + strand at 213.344 kb on - strand at 213.344 kb on - strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.422 kb on + strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.472 kb on - strand at 213.696 kb on - strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.847 kb on - strand, within Psyr_0199 at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.978 kb on - strand at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.152 kb on - strand, within Psyr_0200 at 214.167 kb on - strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.244 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.508 kb on + strand, within Psyr_0200 at 214.603 kb on + strand, within Psyr_0200 at 214.652 kb on + strand, within Psyr_0200 at 214.655 kb on + strand, within Psyr_0200 at 214.656 kb on - strand, within Psyr_0200
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 212,633 - Psyr_0198 0.55 -1.5 212,638 + Psyr_0198 0.56 +0.9 212,638 + Psyr_0198 0.56 -0.1 212,638 + Psyr_0198 0.56 +1.8 212,639 - Psyr_0198 0.56 +4.6 212,639 - Psyr_0198 0.56 +1.1 212,830 + Psyr_0198 0.70 +3.0 212,830 + Psyr_0198 0.70 -1.9 212,830 + Psyr_0198 0.70 +1.7 212,863 + Psyr_0198 0.73 -2.1 212,863 + Psyr_0198 0.73 -1.9 212,863 + Psyr_0198 0.73 +2.2 212,863 + Psyr_0198 0.73 -1.8 212,863 + Psyr_0198 0.73 -0.9 212,863 + Psyr_0198 0.73 +2.5 212,863 + Psyr_0198 0.73 -2.1 212,863 + Psyr_0198 0.73 +1.0 212,863 + Psyr_0198 0.73 +3.4 212,863 + Psyr_0198 0.73 +1.4 212,863 + Psyr_0198 0.73 -2.0 212,863 + Psyr_0198 0.73 +1.3 212,864 - Psyr_0198 0.73 +3.5 212,864 - Psyr_0198 0.73 +3.4 212,864 - Psyr_0198 0.73 -1.2 212,864 - Psyr_0198 0.73 -1.0 212,864 - Psyr_0198 0.73 +4.0 212,864 - Psyr_0198 0.73 +1.0 212,864 - Psyr_0198 0.73 +3.0 212,864 - Psyr_0198 0.73 +2.2 212,864 - Psyr_0198 0.73 -0.7 212,864 - Psyr_0198 0.73 -1.6 212,864 - Psyr_0198 0.73 -1.6 212,864 - Psyr_0198 0.73 -1.2 212,864 - Psyr_0198 0.73 -1.0 213,010 + Psyr_0198 0.84 +1.4 213,010 + Psyr_0198 0.84 -1.8 213,059 + Psyr_0198 0.88 +4.2 213,060 - Psyr_0198 0.88 -1.3 213,060 - Psyr_0198 0.88 -0.8 213,172 + -1.3 213,172 + +2.8 213,172 + -0.4 213,172 + +2.2 213,172 + +4.0 213,172 + -0.7 213,173 - +3.0 213,173 - +3.5 213,173 - +3.8 213,173 - -1.4 213,173 - -0.8 213,185 + +2.9 213,232 + -1.8 213,232 + +0.1 213,232 + +1.2 213,232 + -1.3 213,233 - -0.5 213,233 - -0.9 213,233 - -0.7 213,233 - -0.7 213,235 + +2.5 213,235 + +0.9 213,236 - -1.9 213,236 - +3.2 213,281 - +3.5 213,343 + +3.9 213,343 + -2.1 213,344 - +1.8 213,344 - +0.8 213,352 + -0.8 213,352 + +3.4 213,352 + -1.0 213,353 - -0.2 213,353 - +0.1 213,353 - +3.9 213,422 + -1.0 213,423 - +2.2 213,423 - +1.8 213,423 - +0.6 213,423 - -1.2 213,423 - +3.0 213,472 - -2.9 213,696 - Psyr_0199 0.46 +4.2 213,722 + Psyr_0199 0.52 +3.8 213,722 + Psyr_0199 0.52 -2.1 213,847 - Psyr_0199 0.83 -2.2 213,959 + +0.8 213,959 + +2.0 213,959 + -0.8 213,959 + -1.0 213,959 + -3.4 213,959 + -0.3 213,959 + -0.0 213,960 - +1.8 213,960 - +2.8 213,960 - -2.8 213,960 - +1.0 213,960 - -1.3 213,960 - +2.2 213,960 - -1.4 213,964 + +1.3 213,964 + -0.2 213,964 + -1.0 213,964 + -1.1 213,964 + +4.6 213,964 + -0.9 213,965 - -0.1 213,965 - +3.9 213,965 - -1.8 213,965 - -1.9 213,978 - +1.8 214,151 + Psyr_0200 0.13 -1.6 214,151 + Psyr_0200 0.13 +0.7 214,151 + Psyr_0200 0.13 +4.2 214,152 - Psyr_0200 0.13 -1.9 214,167 - Psyr_0200 0.14 -1.0 214,187 + Psyr_0200 0.15 -2.2 214,187 + Psyr_0200 0.15 +0.6 214,187 + Psyr_0200 0.15 +3.5 214,187 + Psyr_0200 0.15 -3.0 214,188 - Psyr_0200 0.15 -1.0 214,188 - Psyr_0200 0.15 -4.0 214,188 - Psyr_0200 0.15 +2.2 214,244 + Psyr_0200 0.19 +4.4 214,418 + Psyr_0200 0.32 +3.2 214,418 + Psyr_0200 0.32 -3.4 214,418 + Psyr_0200 0.32 -1.3 214,490 + Psyr_0200 0.37 -0.6 214,490 + Psyr_0200 0.37 +1.7 214,490 + Psyr_0200 0.37 -0.2 214,490 + Psyr_0200 0.37 +1.0 214,490 + Psyr_0200 0.37 -1.6 214,490 + Psyr_0200 0.37 -0.5 214,491 - Psyr_0200 0.37 -0.3 214,491 - Psyr_0200 0.37 -1.0 214,491 - Psyr_0200 0.37 +3.9 214,491 - Psyr_0200 0.37 -1.6 214,508 + Psyr_0200 0.38 -2.0 214,603 + Psyr_0200 0.45 -1.6 214,652 + Psyr_0200 0.48 -2.7 214,655 + Psyr_0200 0.49 -2.2 214,656 - Psyr_0200 0.49 +0.2
Or see this region's nucleotide sequence