Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0147

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
159,127	+		Psyr_0146	0.63	+0.6
159,127	+		Psyr_0146	0.63	+1.8
159,128	-		Psyr_0146	0.63	-1.1
159,128	-		Psyr_0146	0.63	-0.3
159,167	+		Psyr_0146	0.66	+2.2
159,167	+		Psyr_0146	0.66	-0.6
159,341	-		Psyr_0146	0.79	-0.7
159,614	+				+3.9
159,614	+				+0.2
159,614	+				+0.1
159,614	+				-0.0
159,614	+				+2.5
159,614	+				+1.8
159,614	+				+3.8
159,614	+				-3.0
159,614	+				-0.8
159,614	+				+3.0
159,614	+				-3.2
159,614	+				+0.2
159,614	+				-1.0
159,614	+				+0.9
159,614	+				+1.0
159,614	+				-0.5
159,615	-				-2.4
159,615	-				+0.2
159,615	-				+2.5
159,615	-				+1.3
159,615	-				+3.2
159,615	-				-1.6
159,615	-				-0.3
159,615	-				+1.1
159,615	-				+3.0
159,615	-				+4.4
159,615	-				-0.9
159,615	-				+0.7
159,615	-				-1.8
159,615	-				-2.3
159,686	+				+1.8
159,686	+				+0.2
159,686	+				-1.8
159,686	+				-0.8
159,908	+				-1.3
159,908	+				+0.1
160,020	-		Psyr_0147	0.14	+1.2
160,020	-		Psyr_0147	0.14	+1.2
160,333	+		Psyr_0147	0.47	+1.1
160,333	+		Psyr_0147	0.47	+3.8
160,334	-		Psyr_0147	0.47	-1.4
160,334	-		Psyr_0147	0.47	+3.7
160,415	+		Psyr_0147	0.56	-2.4
160,416	-		Psyr_0147	0.56	+4.0
160,416	-		Psyr_0147	0.56	-1.4
160,416	-		Psyr_0147	0.56	-1.1
160,556	-		Psyr_0147	0.71	-1.2
160,556	-		Psyr_0147	0.71	+2.5
160,817	+				+1.2
160,820	+				+0.5
160,821	-				-0.5
160,821	-				+3.0
160,821	-				+0.2
160,821	-				-0.4
160,821	-				-2.1
160,857	+				-1.5
160,857	+				-2.3
160,857	+				+0.2
160,857	+				+0.2
160,858	-				-0.3
161,013	+		Psyr_0148	0.59	-1.5
161,013	+		Psyr_0148	0.59	-1.5
161,013	+		Psyr_0148	0.59	-3.3
161,013	+		Psyr_0148	0.59	-0.4
161,013	+		Psyr_0148	0.59	+3.7
161,014	-		Psyr_0148	0.59	+3.7
161,067	+		Psyr_0148	0.81	+2.8
161,067	+		Psyr_0148	0.81	-2.8
161,128	+				-0.3
161,190	+				-1.5
161,190	+				+1.1
161,191	-				+4.7
161,227	-				-0.2
161,227	-				+1.0
161,388	+		Psyr_0149	0.14	-2.8
161,388	+		Psyr_0149	0.14	-2.7
161,389	-		Psyr_0149	0.14	+1.8
161,389	-		Psyr_0149	0.14	-1.4
161,389	-		Psyr_0149	0.14	-0.9
161,389	-		Psyr_0149	0.14	-1.5
161,392	-		Psyr_0149	0.14	-1.7
161,392	-		Psyr_0149	0.14	+1.2
161,526	-		Psyr_0149	0.23	+2.5
161,733	+		Psyr_0149	0.37	+4.4
161,734	-		Psyr_0149	0.37	+3.4
161,734	-		Psyr_0149	0.37	-0.8