Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0139

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
148,461	+		Psyr_0138	0.69	+3.0
148,461	+		Psyr_0138	0.69	+2.5
148,462	-		Psyr_0138	0.69	+4.1
148,473	-		Psyr_0138	0.69	+2.2
148,494	+		Psyr_0138	0.70	-1.4
148,494	+		Psyr_0138	0.70	-1.7
148,495	-		Psyr_0138	0.70	-1.0
148,497	+		Psyr_0138	0.70	-1.8
148,497	+		Psyr_0138	0.70	-1.8
148,497	+		Psyr_0138	0.70	-0.5
148,497	+		Psyr_0138	0.70	+0.1
148,497	+		Psyr_0138	0.70	+0.1
148,497	+		Psyr_0138	0.70	+1.8
148,497	+		Psyr_0138	0.70	-1.3
148,497	+		Psyr_0138	0.70	-1.5
148,497	+		Psyr_0138	0.70	-0.7
148,498	-		Psyr_0138	0.70	+4.3
148,498	-		Psyr_0138	0.70	+1.2
148,498	-		Psyr_0138	0.70	+1.8
148,498	-		Psyr_0138	0.70	-1.1
148,498	-		Psyr_0138	0.70	-1.7
148,498	-		Psyr_0138	0.70	-0.9
148,498	-		Psyr_0138	0.70	-0.2
148,498	-		Psyr_0138	0.70	-2.1
148,645	-		Psyr_0138	0.75	+1.2
148,748	+		Psyr_0138	0.79	-0.5
148,749	-		Psyr_0138	0.79	-0.0
148,752	+		Psyr_0138	0.79	+0.2
148,752	+		Psyr_0138	0.79	-0.3
148,753	-		Psyr_0138	0.79	-4.6
148,765	-		Psyr_0138	0.80	-1.4
148,882	-		Psyr_0138	0.84	+1.3
148,914	+		Psyr_0138	0.85	-0.8
148,914	+		Psyr_0138	0.85	+1.0
148,914	+		Psyr_0138	0.85	-1.5
148,914	+		Psyr_0138	0.85	-1.3
148,914	+		Psyr_0138	0.85	+3.4
148,914	+		Psyr_0138	0.85	+0.1
148,914	+		Psyr_0138	0.85	+2.1
148,915	-		Psyr_0138	0.85	-2.1
148,915	-		Psyr_0138	0.85	-1.2
148,915	-		Psyr_0138	0.85	-0.2
148,915	-		Psyr_0138	0.85	-1.4
148,915	-		Psyr_0138	0.85	-1.1
148,915	-		Psyr_0138	0.85	-2.5
148,915	-		Psyr_0138	0.85	+3.9
148,915	-		Psyr_0138	0.85	+1.8
148,956	+		Psyr_0138	0.87	+5.0
148,957	-		Psyr_0138	0.87	+2.5
148,957	-		Psyr_0138	0.87	+1.2
149,079	+				-0.4
149,080	-				-0.6
149,088	+				+2.8
149,121	+				+0.8
149,150	+				-0.6
149,150	+				+3.8
149,150	+				-1.5
149,150	+				-1.0
149,151	-				-1.1
149,151	-				+2.8
149,151	-				-2.2
149,151	-				+0.3
149,192	+				+3.5
149,192	+				-1.3
149,192	+				-1.2
149,192	+				-0.5
149,192	+				+0.0
149,192	+				+3.0
149,192	+				+1.0
149,192	+				-0.6
149,192	+				+0.6
149,192	+				+0.2
149,192	+				-0.3
149,192	+				-0.2
149,192	+				-0.5
149,193	-				-0.4
149,193	-				+0.2
149,193	-				+2.5
149,193	-				-2.3
149,193	-				+0.4
149,193	-				-1.1
149,193	-				+1.5
149,193	-				-0.4
149,229	+				-1.8
149,229	+				-1.0
149,229	+				+0.2
149,229	+				-0.6
149,230	-				-1.3
149,230	-				-3.6
149,301	+				+1.8
149,301	+				-1.1
149,301	+				-1.9
149,302	-				-1.9
149,302	-				-0.6
149,302	-				-2.3
149,332	-				-0.4
149,332	-				+0.0
149,439	+				+1.2
149,440	-				-0.6
149,559	+				+4.3
149,559	+				+4.4
149,560	-				+3.5
149,560	-				+1.0
149,604	+				+1.2
149,673	+		Psyr_0139	0.11	-2.2
149,674	-		Psyr_0139	0.12	-1.2
149,730	+		Psyr_0139	0.14	+0.1
149,766	+		Psyr_0139	0.16	-0.8
149,766	+		Psyr_0139	0.16	-0.7
149,775	+		Psyr_0139	0.17	+1.8
149,776	-		Psyr_0139	0.17	+2.4
149,776	-		Psyr_0139	0.17	+1.8
149,776	-		Psyr_0139	0.17	-1.4
149,776	-		Psyr_0139	0.17	-0.5
149,893	-		Psyr_0139	0.23	-0.8
149,931	+		Psyr_0139	0.25	+2.2
150,219	+		Psyr_0139	0.40	-0.4
150,220	-		Psyr_0139	0.40	-2.8
150,220	-		Psyr_0139	0.40	-0.8
150,220	-		Psyr_0139	0.40	+3.7
150,220	-		Psyr_0139	0.40	-2.0
150,220	-		Psyr_0139	0.40	-0.4
150,237	-		Psyr_0139	0.41	+3.5
150,246	+		Psyr_0139	0.42	+2.8
150,246	+		Psyr_0139	0.42	-0.9
150,246	+		Psyr_0139	0.42	+1.0
150,246	+		Psyr_0139	0.42	-0.4
150,246	+		Psyr_0139	0.42	+0.2
150,247	-		Psyr_0139	0.42	+0.9
150,247	-		Psyr_0139	0.42	-0.9
150,247	-		Psyr_0139	0.42	+0.2
150,247	-		Psyr_0139	0.42	-0.1
150,247	-		Psyr_0139	0.42	+0.5
150,247	-		Psyr_0139	0.42	+0.2
150,247	-		Psyr_0139	0.42	+0.2
150,249	+		Psyr_0139	0.42	-0.3
150,300	+		Psyr_0139	0.45	-0.0
150,300	+		Psyr_0139	0.45	-2.2
150,301	-		Psyr_0139	0.45	+1.8
150,301	-		Psyr_0139	0.45	+2.2
150,525	+		Psyr_0139	0.57	-1.0
150,526	-		Psyr_0139	0.57	+1.1
150,526	-		Psyr_0139	0.57	+2.5
150,543	+		Psyr_0139	0.58	-0.0
150,543	+		Psyr_0139	0.58	+0.5
150,543	+		Psyr_0139	0.58	+0.2
150,543	+		Psyr_0139	0.58	+1.5
150,543	+		Psyr_0139	0.58	-0.0
150,543	+		Psyr_0139	0.58	+1.8
150,543	+		Psyr_0139	0.58	+0.2
150,543	+		Psyr_0139	0.58	+2.2
150,543	+		Psyr_0139	0.58	-2.5
150,544	-		Psyr_0139	0.58	+0.3
150,544	-		Psyr_0139	0.58	-2.0
150,544	-		Psyr_0139	0.58	+1.9
150,544	-		Psyr_0139	0.58	-0.6
150,544	-		Psyr_0139	0.58	+0.1
150,544	-		Psyr_0139	0.58	+3.8
150,651	+		Psyr_0139	0.63	+3.2
150,652	-		Psyr_0139	0.63	+2.8
150,894	+		Psyr_0139	0.76	+2.8
150,894	+		Psyr_0139	0.76	-1.1
150,894	+		Psyr_0139	0.76	-1.2
150,894	+		Psyr_0139	0.76	+0.2
150,895	-		Psyr_0139	0.76	-0.7
150,895	-		Psyr_0139	0.76	-1.4
150,895	-		Psyr_0139	0.76	-1.1
150,895	-		Psyr_0139	0.76	+1.0
150,921	+		Psyr_0139	0.78	+2.5
150,987	+		Psyr_0139	0.81	+0.2
150,987	+		Psyr_0139	0.81	-0.6
150,987	+		Psyr_0139	0.81	-0.8
150,988	-		Psyr_0139	0.81	-2.1
150,988	-		Psyr_0139	0.81	-1.4
150,988	-		Psyr_0139	0.81	+2.2
150,988	-		Psyr_0139	0.81	+3.0
150,988	-		Psyr_0139	0.81	-0.4
150,988	-		Psyr_0139	0.81	+2.8
150,996	+		Psyr_0139	0.82	+2.8
151,117	-		Psyr_0139	0.88	-0.5
151,152	+				-1.7
151,155	+				-1.5
151,155	+				+2.8
151,155	+				+2.2
151,155	+				+3.8
151,155	+				+4.4
151,155	+				+0.2
151,155	+				-1.6
151,155	+				-1.0
151,155	+				+0.6
151,155	+				+4.2
151,155	+				-1.7
151,155	+				+1.2
151,155	+				-0.6
151,155	+				-0.5
151,155	+				+3.4
151,155	+				+0.2
151,155	+				-3.5
151,156	-				+0.2
151,156	-				-1.4
151,156	-				+2.2
151,156	-				-1.9
151,156	-				+0.2
151,156	-				-1.4
151,156	-				-0.2
151,156	-				-1.4
151,156	-				-1.3
151,156	-				-4.0
151,156	-				+5.1
151,156	-				-3.4
151,156	-				+3.2
151,156	-				-0.7
151,156	-				+2.2
151,156	-				-1.8
151,156	-				-2.0
151,156	-				+3.5
151,156	-				+2.2
151,156	-				+0.1
151,156	-				+4.0
151,156	-				+5.1
151,156	-				-2.6
151,170	+				+4.1
151,170	+				+0.6
151,170	+				+3.4
151,170	+				+0.1
151,170	+				-2.5
151,170	+				-1.5
151,170	+				+1.8
151,170	+				+0.2
151,171	-				+4.0
151,171	-				+0.2
151,171	-				-1.1
151,171	-				-1.0
151,171	-				+4.0
151,171	-				-0.3
151,171	-				+0.8
151,171	-				-1.2
151,173	+				+0.7
151,236	+				-0.3
151,236	+				-2.8
151,236	+				-0.9
151,236	+				-1.1
151,237	-				-0.1
151,336	-				-1.4
151,336	-				+2.5
151,351	+				+0.8
151,351	+				-0.0
151,352	-				+2.2
151,352	-				+3.8
151,585	+		Psyr_0140	0.23	+0.1
151,586	-		Psyr_0140	0.23	-1.2
151,636	+		Psyr_0140	0.28	-1.3
151,636	+		Psyr_0140	0.28	-1.4
151,637	-		Psyr_0140	0.28	-1.2
151,750	+		Psyr_0140	0.38	-1.0
151,900	+		Psyr_0140	0.52	-1.4
151,900	+		Psyr_0140	0.52	-2.0
151,900	+		Psyr_0140	0.52	-1.0
151,900	+		Psyr_0140	0.52	+1.0
151,900	+		Psyr_0140	0.52	+3.7
151,900	+		Psyr_0140	0.52	-1.7
151,901	-		Psyr_0140	0.52	+3.0
151,901	-		Psyr_0140	0.52	-0.3
151,978	+		Psyr_0140	0.60	-0.4
151,978	+		Psyr_0140	0.60	-0.6
151,978	+		Psyr_0140	0.60	-0.0
151,978	+		Psyr_0140	0.60	-3.9
151,979	-		Psyr_0140	0.60	+2.8
151,979	-		Psyr_0140	0.60	+0.4
152,083	+		Psyr_0140	0.69	-0.7
152,131	+		Psyr_0140	0.74	-2.1
152,256	+		Psyr_0140	0.86	+3.8
152,256	+		Psyr_0140	0.86	+3.7
152,257	-		Psyr_0140	0.86	-0.7