Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0112

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
121,836	+		Psyr_0110	0.38	-1.3
121,836	+		Psyr_0110	0.38	+0.3
121,836	+		Psyr_0110	0.38	+0.2
121,836	+		Psyr_0110	0.38	-0.9
121,836	+		Psyr_0110	0.38	+0.2
121,837	-		Psyr_0110	0.38	+1.2
121,837	-		Psyr_0110	0.38	+1.8
121,865	+		Psyr_0110	0.42	+0.3
121,866	-		Psyr_0110	0.42	-0.1
121,866	-		Psyr_0110	0.42	+0.2
121,866	-		Psyr_0110	0.42	-0.5
121,866	-		Psyr_0110	0.42	-1.1
121,899	+		Psyr_0110	0.46	+1.1
121,915	+		Psyr_0110	0.48	-0.5
121,916	-		Psyr_0110	0.48	-1.2
121,916	-		Psyr_0110	0.48	+0.5
121,931	-		Psyr_0110	0.49	+1.2
121,931	-		Psyr_0110	0.49	-2.1
121,956	-		Psyr_0110	0.52	-0.9
121,967	+		Psyr_0110	0.54	-1.3
121,967	+		Psyr_0110	0.54	-0.2
121,967	+		Psyr_0110	0.54	-0.6
121,967	+		Psyr_0110	0.54	+0.1
121,967	+		Psyr_0110	0.54	-0.0
121,967	+		Psyr_0110	0.54	-1.0
121,967	+		Psyr_0110	0.54	-2.1
121,967	+		Psyr_0110	0.54	+3.8
121,967	+		Psyr_0110	0.54	-0.0
121,967	+		Psyr_0110	0.54	+2.0
121,967	+		Psyr_0110	0.54	-1.4
121,967	+		Psyr_0110	0.54	-2.5
121,968	-		Psyr_0110	0.54	-2.0
121,968	-		Psyr_0110	0.54	-0.0
121,968	-		Psyr_0110	0.54	+4.3
121,968	-		Psyr_0110	0.54	-1.6
121,968	-		Psyr_0110	0.54	-0.1
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	-0.5
121,968	-		Psyr_0110	0.54	-2.0
121,968	-		Psyr_0110	0.54	+3.5
121,968	-		Psyr_0110	0.54	-1.7
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	-1.1
122,012	+		Psyr_0110	0.59	-1.7
122,013	-		Psyr_0110	0.59	-0.9
122,141	+		Psyr_0110	0.74	+0.2
122,141	+		Psyr_0110	0.74	-0.9
122,141	+		Psyr_0110	0.74	-0.6
122,141	+		Psyr_0110	0.74	-0.5
122,141	+		Psyr_0110	0.74	-1.3
122,141	+		Psyr_0110	0.74	+4.0
122,141	+		Psyr_0110	0.74	-2.5
122,142	-		Psyr_0110	0.74	+0.2
122,142	-		Psyr_0110	0.74	-1.8
122,142	-		Psyr_0110	0.74	-0.6
122,146	+		Psyr_0110	0.75	+0.3
122,146	+		Psyr_0110	0.75	-0.8
122,146	+		Psyr_0110	0.75	-0.1
122,146	+		Psyr_0110	0.75	-3.6
122,147	-		Psyr_0110	0.75	-1.1
122,147	-		Psyr_0110	0.75	+2.5
122,147	-		Psyr_0110	0.75	-1.8
122,147	-		Psyr_0110	0.75	+0.1
122,147	-		Psyr_0110	0.75	-3.2
122,147	-		Psyr_0110	0.75	-1.2
122,147	-		Psyr_0110	0.75	+2.8
122,184	-		Psyr_0110	0.79	-1.3
122,184	-		Psyr_0110	0.79	-2.7
122,184	-		Psyr_0110	0.79	-0.4
122,187	+		Psyr_0110	0.79	-1.2
122,187	+		Psyr_0110	0.79	-0.2
122,188	-		Psyr_0110	0.80	+0.2
122,265	+		Psyr_0110	0.89	+3.7
122,315	+				+1.2
122,315	+				+2.2
122,315	+				-0.1
122,338	-				+0.2
122,367	+				-1.9
122,367	+				+2.8
122,367	+				-0.8
122,367	+				-0.4
122,367	+				-1.3
122,367	+				+1.2
122,367	+				+1.1
122,367	+				-2.1
122,367	+				-0.9
122,367	+				+2.2
122,367	+				+1.8
122,367	+				+1.9
122,367	+				-0.5
122,367	+				+0.4
122,367	+				-0.7
122,367	+				-0.8
122,367	+				+2.5
122,367	+				+0.5
122,368	-				-1.8
122,368	-				+3.2
122,368	-				+3.2
122,368	-				-0.2
122,368	-				+0.2
122,368	-				+0.5
122,368	-				-0.7
122,368	-				-1.1
122,368	-				+0.9
122,368	-				+3.2
122,368	-				-1.5
122,409	-		Psyr_0111	0.11	-0.8
122,409	-		Psyr_0111	0.11	+2.5
122,442	-		Psyr_0111	0.19	+1.2
122,447	+		Psyr_0111	0.20	-1.0
122,448	-		Psyr_0111	0.20	-0.9
122,448	-		Psyr_0111	0.20	+0.2
122,448	-		Psyr_0111	0.20	+0.8
122,517	-		Psyr_0111	0.36	-1.3
122,533	+		Psyr_0111	0.40	-1.0
122,558	+		Psyr_0111	0.45	+4.9
122,558	+		Psyr_0111	0.45	+1.9
122,558	+		Psyr_0111	0.45	+3.4
122,559	-		Psyr_0111	0.46	+0.8
122,559	-		Psyr_0111	0.46	+0.1
122,588	+		Psyr_0111	0.52	+0.7
122,589	-		Psyr_0111	0.53	+0.9
122,589	-		Psyr_0111	0.53	-0.1
122,589	-		Psyr_0111	0.53	-1.0
122,608	-		Psyr_0111	0.57	-1.8
122,617	+		Psyr_0111	0.59	-0.2
122,617	+		Psyr_0111	0.59	-0.4
122,617	+		Psyr_0111	0.59	+0.6
122,617	+		Psyr_0111	0.59	+0.6
122,618	-		Psyr_0111	0.59	+0.9
122,697	+		Psyr_0111	0.78	+1.3
122,698	-		Psyr_0111	0.78	-0.5
122,732	+		Psyr_0111	0.86	-0.1
122,733	-		Psyr_0111	0.86	-1.5
122,733	-		Psyr_0111	0.86	-1.3
122,735	+		Psyr_0111	0.86	-1.6
122,822	-				+1.2
122,838	-				-0.0
122,898	+		Psyr_0112	0.23	+1.2
122,899	-		Psyr_0112	0.23	-0.8
122,954	+		Psyr_0112	0.38	-1.0
122,954	+		Psyr_0112	0.38	+1.2
122,998	-		Psyr_0112	0.49	-0.8
122,998	-		Psyr_0112	0.49	+0.8
123,045	-		Psyr_0112	0.61	+3.4
123,045	-		Psyr_0112	0.61	+0.4
123,045	-		Psyr_0112	0.61	+3.8
123,045	-		Psyr_0112	0.61	+3.2
123,054	-		Psyr_0112	0.64	-1.5
123,068	+		Psyr_0112	0.67	+4.4
123,068	+		Psyr_0112	0.67	+4.7
123,068	+		Psyr_0112	0.67	-1.4
123,068	+		Psyr_0112	0.67	+2.2
123,069	-		Psyr_0112	0.67	-0.5
123,149	-		Psyr_0112	0.88	+0.4
123,149	-		Psyr_0112	0.88	-0.6
123,193	+				+1.5
123,193	+				-2.0
123,193	+				+3.0
123,193	+				-0.8
123,193	+				-0.4
123,193	+				-1.6
123,193	+				+2.2
123,193	+				-1.5
123,194	-				-0.7
123,194	-				+0.4
123,194	-				-1.5
123,201	+				-2.0
123,201	+				+0.5
123,201	+				+4.2
123,202	-				-2.3
123,202	-				+0.2
123,202	-				+4.2
123,220	+				-0.7
123,220	+				-3.7
123,220	+				+3.4
123,220	+				-1.2
123,221	-				-0.3
123,221	-				-0.8
123,221	-				-2.5
123,221	-				+0.2
123,233	+				+4.0
123,233	+				+0.4
123,234	-				+2.2
123,234	-				+0.2
123,234	-				+3.7
123,234	-				-0.8
123,254	+				+2.2
123,254	+				-1.7
123,255	-				-0.0
123,255	-				+0.8
123,255	-				+0.2
123,255	-				-1.3
123,255	-				+3.8
123,283	-				-0.3
123,283	-				-0.9
123,343	+				+1.8
123,343	+				-1.6
123,343	+				+1.8
123,344	-				-3.9
123,344	-				-1.0
123,344	-				+4.0
123,344	-				-0.2
123,375	+				-1.3
123,396	-				+0.2
123,415	-				+1.2
123,415	-				+4.0
123,513	+				+1.8
123,536	-				-2.5
123,617	-				+1.2
123,650	+				-0.2
123,650	+				-0.5
123,650	+				-0.8
123,650	+				+0.9
123,651	-				-0.5
123,651	-				-0.5
123,730	+				+0.4
123,731	-				-0.7
123,898	+				-1.0
123,899	-				+3.5
123,899	-				+4.1
123,932	-				-0.0
123,956	+				+3.4
123,956	+				-2.4
123,957	-				+2.8
123,957	-				+2.5
123,957	-				-0.2
123,957	-				-1.4
123,957	-				-1.1
123,972	+				-2.4
123,972	+				+3.0
123,973	-				+0.6
123,998	-				+0.5
124,047	-		Psyr_0113	0.16	-3.2