Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0109

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
119,958	-		Psyr_0108	0.74	+2.8
120,110	+		Psyr_0108	0.86	-0.9
120,150	-		Psyr_0108	0.89	-0.5
120,150	-		Psyr_0108	0.89	+3.2
120,260	+				-0.3
120,349	+				+0.2
120,349	+				-0.6
120,349	+				+3.0
120,349	+				+3.8
120,349	+				+2.5
120,350	-				+0.0
120,350	-				+2.5
120,350	-				+0.2
120,350	-				-0.4
120,519	+				-1.9
120,519	+				+3.0
120,520	-				-0.4
120,520	-				+3.5
120,520	-				+0.2
120,622	+				+4.1
120,649	-				-0.2
120,664	+				-3.4
120,665	-				-2.0
120,680	+				-0.7
120,680	+				-0.9
120,680	+				-0.3
120,681	-				+1.4
120,681	-				+2.5
120,688	+				-1.2
120,688	+				+0.5
120,688	+				+0.4
120,689	-				-1.0
120,693	+				-2.2
120,694	-				+0.8
120,694	-				-0.3
120,694	-				+1.2
120,694	-				+1.0
120,741	-				-1.1
120,741	-				+3.9
120,741	-				-0.9
120,759	+				-5.2
120,759	+				-1.9
120,760	-				-1.7
120,760	-				+0.2
120,769	+		Psyr_0109	0.12	-2.6
120,769	+		Psyr_0109	0.12	-1.9
120,829	+		Psyr_0109	0.26	+4.6
120,908	-		Psyr_0109	0.44	+2.5
120,909	+		Psyr_0109	0.45	-1.5
120,910	-		Psyr_0109	0.45	+0.5
120,910	-		Psyr_0109	0.45	-1.1
120,917	+		Psyr_0109	0.46	-0.8
120,917	+		Psyr_0109	0.46	-0.0
120,918	-		Psyr_0109	0.47	+2.2
120,918	-		Psyr_0109	0.47	+4.0
120,918	-		Psyr_0109	0.47	+2.2
120,918	-		Psyr_0109	0.47	-0.7
120,927	-		Psyr_0109	0.49	-2.4
120,939	+		Psyr_0109	0.52	+3.2
120,950	+		Psyr_0109	0.54	-2.1
121,001	-		Psyr_0109	0.66	-1.1
121,001	-		Psyr_0109	0.66	+3.7
121,019	+		Psyr_0109	0.70	-0.5
121,019	+		Psyr_0109	0.70	+0.2
121,019	+		Psyr_0109	0.70	+3.2
121,019	+		Psyr_0109	0.70	+3.7
121,019	+		Psyr_0109	0.70	-0.0
121,019	+		Psyr_0109	0.70	+1.8
121,020	-		Psyr_0109	0.71	-1.0
121,020	-		Psyr_0109	0.71	+3.2
121,020	-		Psyr_0109	0.71	-0.2
121,021	+		Psyr_0109	0.71	-1.4
121,022	-		Psyr_0109	0.71	+3.7
121,091	+		Psyr_0109	0.87	-1.6
121,126	+				+2.2
121,126	+				-0.2
121,127	-				-4.1
121,139	-				-0.3
121,139	-				-2.9
121,142	+				+1.2
121,239	-				-2.0
121,239	-				-1.8
121,251	+				-1.0
121,251	+				-1.7
121,251	+				-0.9
121,251	+				+0.7
121,251	+				-1.1
121,251	+				+3.2
121,251	+				-1.5
121,251	+				-5.1
121,251	+				+1.8
121,252	-				-1.8
121,252	-				-0.5
121,255	+				-2.0
121,255	+				-0.1
121,255	+				+3.7
121,255	+				+0.8
121,255	+				+0.1
121,256	-				-0.7
121,256	-				+2.2
121,256	-				-2.4
121,338	+				-0.8
121,338	+				-0.1
121,339	-				-2.1
121,364	+				+1.2
121,364	+				-0.6
121,365	-				+3.9
121,412	+				+4.0
121,412	+				-1.2
121,459	-				-0.2
121,505	+				+0.1
121,505	+				+0.2
121,505	+				+2.2
121,505	+				+0.4
121,505	+				-0.5
121,505	+				+2.5
121,505	+				-1.0
121,505	+				+1.1
121,505	+				-2.1
121,505	+				-1.0
121,505	+				-1.9
121,506	-				+0.2
121,506	-				-3.6
121,506	-				+0.6
121,506	-				-2.8
121,522	-				-0.1
121,550	+				-1.4
121,551	-				+3.5
121,551	-				-2.5
121,551	-				-1.2
121,551	-				+1.2
121,565	+				+0.1
121,571	+				+0.4
121,571	+				+2.8
121,571	+				-4.0
121,571	+				-1.9
121,571	+				-0.5
121,571	+				-2.0
121,571	+				+3.2
121,571	+				+1.6
121,571	+				+2.2
121,571	+				+0.5
121,571	+				-0.6
121,571	+				-0.2
121,571	+				-0.2
121,571	+				-0.2
121,571	+				-0.6
121,572	-				-0.7
121,572	-				-1.0
121,572	-				+0.1
121,572	-				+1.8
121,572	-				+1.9
121,572	-				-2.8
121,572	-				+1.6
121,572	-				-3.6
121,572	-				-0.9
121,572	-				+2.2
121,572	-				+2.5
121,572	-				+0.2
121,572	-				-2.3
121,572	-				-1.6
121,654	+		Psyr_0110	0.17	+2.1
121,655	-		Psyr_0110	0.17	-2.5
121,689	+		Psyr_0110	0.21	-1.1
121,792	-		Psyr_0110	0.33	-1.8
121,836	+		Psyr_0110	0.38	-1.3
121,836	+		Psyr_0110	0.38	+0.3
121,836	+		Psyr_0110	0.38	+0.2
121,836	+		Psyr_0110	0.38	-0.9
121,836	+		Psyr_0110	0.38	+0.2
121,837	-		Psyr_0110	0.38	+1.2
121,837	-		Psyr_0110	0.38	+1.8
121,865	+		Psyr_0110	0.42	+0.3
121,866	-		Psyr_0110	0.42	-0.1
121,866	-		Psyr_0110	0.42	+0.2
121,866	-		Psyr_0110	0.42	-0.5
121,866	-		Psyr_0110	0.42	-1.1
121,899	+		Psyr_0110	0.46	+1.1
121,915	+		Psyr_0110	0.48	-0.5
121,916	-		Psyr_0110	0.48	-1.2
121,916	-		Psyr_0110	0.48	+0.5
121,931	-		Psyr_0110	0.49	+1.2
121,931	-		Psyr_0110	0.49	-2.1
121,956	-		Psyr_0110	0.52	-0.9
121,967	+		Psyr_0110	0.54	-1.3
121,967	+		Psyr_0110	0.54	-0.2
121,967	+		Psyr_0110	0.54	-0.6
121,967	+		Psyr_0110	0.54	+0.1
121,967	+		Psyr_0110	0.54	-0.0
121,967	+		Psyr_0110	0.54	-1.0
121,967	+		Psyr_0110	0.54	-2.1
121,967	+		Psyr_0110	0.54	+3.8
121,967	+		Psyr_0110	0.54	-0.0
121,967	+		Psyr_0110	0.54	+2.0
121,967	+		Psyr_0110	0.54	-1.4
121,967	+		Psyr_0110	0.54	-2.5
121,968	-		Psyr_0110	0.54	-2.0
121,968	-		Psyr_0110	0.54	-0.0
121,968	-		Psyr_0110	0.54	+4.3
121,968	-		Psyr_0110	0.54	-1.6
121,968	-		Psyr_0110	0.54	-0.1
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	-0.5
121,968	-		Psyr_0110	0.54	-2.0
121,968	-		Psyr_0110	0.54	+3.5
121,968	-		Psyr_0110	0.54	-1.7
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	-1.1
122,012	+		Psyr_0110	0.59	-1.7
122,013	-		Psyr_0110	0.59	-0.9
122,141	+		Psyr_0110	0.74	+0.2
122,141	+		Psyr_0110	0.74	-0.9
122,141	+		Psyr_0110	0.74	-0.6
122,141	+		Psyr_0110	0.74	-0.5
122,141	+		Psyr_0110	0.74	-1.3
122,141	+		Psyr_0110	0.74	+4.0
122,141	+		Psyr_0110	0.74	-2.5
122,142	-		Psyr_0110	0.74	+0.2
122,142	-		Psyr_0110	0.74	-1.8
122,142	-		Psyr_0110	0.74	-0.6