Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0079

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0078 and Psyr_0079 are separated by 27 nucleotidesPsyr_0079 and Psyr_0080 overlap by 8 nucleotides Psyr_0078: Psyr_0078 - Beta-lactamase-like protein, at 84,310 to 85,194 _0078 Psyr_0079: Psyr_0079 - conserved hypothetical protein, at 85,222 to 86,475 _0079 Psyr_0080: Psyr_0080 - Protein of unknown function DUF81, at 86,468 to 87,280 _0080 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 84.316 kb on - strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.373 kb on + strandat 84.374 kb on - strandat 84.374 kb on - strandat 84.431 kb on - strand, within Psyr_0078at 84.431 kb on - strand, within Psyr_0078at 84.431 kb on - strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.950 kb on - strandat 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 85.355 kb on - strand, within Psyr_0079at 85.355 kb on - strand, within Psyr_0079at 85.355 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.621 kb on + strand, within Psyr_0079at 85.643 kb on - strand, within Psyr_0079at 85.690 kb on - strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 86.000 kb on + strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.302 kb on + strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.404 kb on + strandat 86.520 kb on + strandat 86.697 kb on - strand, within Psyr_0080at 86.697 kb on - strand, within Psyr_0080at 86.697 kb on - strand, within Psyr_0080at 86.715 kb on + strand, within Psyr_0080at 86.715 kb on + strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.798 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 87.121 kb on + strand, within Psyr_0080at 87.121 kb on + strand, within Psyr_0080at 87.122 kb on - strand, within Psyr_0080at 87.341 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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84,316 - -1.8
84,357 + +3.7
84,357 + +0.5
84,357 + -1.3
84,357 + +0.5
84,358 - +4.0
84,358 - -3.0
84,358 - +4.1
84,358 - +4.0
84,358 - +0.6
84,358 - -0.5
84,373 + -1.9
84,374 - -1.5
84,374 - -2.0
84,431 - Psyr_0078 0.14 +4.0
84,431 - Psyr_0078 0.14 +1.8
84,431 - Psyr_0078 0.14 +3.2
84,949 + Psyr_0078 0.72 -2.1
84,949 + Psyr_0078 0.72 +1.1
84,949 + Psyr_0078 0.72 -1.1
84,950 - -1.6
84,976 + Psyr_0078 0.75 +0.1
84,976 + Psyr_0078 0.75 -0.0
84,976 + Psyr_0078 0.75 +0.2
84,976 + Psyr_0078 0.75 -1.6
84,976 + Psyr_0078 0.75 +0.2
84,976 + Psyr_0078 0.75 +0.6
84,977 - Psyr_0078 0.75 -2.3
84,977 - Psyr_0078 0.75 +0.2
84,977 - Psyr_0078 0.75 +1.5
84,977 - Psyr_0078 0.75 +4.0
84,977 - Psyr_0078 0.75 +1.8
84,977 - Psyr_0078 0.75 -1.0
84,977 - Psyr_0078 0.75 -0.8
85,355 - Psyr_0079 0.11 -1.1
85,355 - Psyr_0079 0.11 -0.7
85,355 - Psyr_0079 0.11 -0.8
85,358 - Psyr_0079 0.11 +0.4
85,358 - Psyr_0079 0.11 -0.3
85,358 - Psyr_0079 0.11 +2.5
85,358 - Psyr_0079 0.11 +0.2
85,621 + Psyr_0079 0.32 -1.1
85,643 - Psyr_0079 0.34 -0.2
85,690 - Psyr_0079 0.37 -0.5
85,741 + Psyr_0079 0.41 -0.1
85,741 + Psyr_0079 0.41 -0.0
85,741 + Psyr_0079 0.41 -0.3
85,741 + Psyr_0079 0.41 +4.5
85,741 + Psyr_0079 0.41 +0.3
85,741 + Psyr_0079 0.41 +0.2
85,741 + Psyr_0079 0.41 +0.4
85,741 + Psyr_0079 0.41 -1.3
85,741 + Psyr_0079 0.41 +1.9
85,741 + Psyr_0079 0.41 +2.5
85,741 + Psyr_0079 0.41 +1.3
85,741 + Psyr_0079 0.41 +0.5
85,741 + Psyr_0079 0.41 +2.8
85,741 + Psyr_0079 0.41 +3.2
85,741 + Psyr_0079 0.41 +4.3
85,741 + Psyr_0079 0.41 +0.1
85,741 + Psyr_0079 0.41 +3.4
85,741 + Psyr_0079 0.41 -1.3
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -0.6
85,742 - Psyr_0079 0.41 +3.0
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -1.8
85,742 - Psyr_0079 0.41 +2.2
85,742 - Psyr_0079 0.41 +2.2
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -1.2
85,742 - Psyr_0079 0.41 -0.1
85,742 - Psyr_0079 0.41 +0.2
85,742 - Psyr_0079 0.41 -1.7
85,742 - Psyr_0079 0.41 +3.5
85,742 - Psyr_0079 0.41 -1.0
85,742 - Psyr_0079 0.41 +4.1
85,742 - Psyr_0079 0.41 -0.8
85,742 - Psyr_0079 0.41 +4.5
85,801 + Psyr_0079 0.46 +1.3
85,801 + Psyr_0079 0.46 -1.1
85,801 + Psyr_0079 0.46 -1.3
85,801 + Psyr_0079 0.46 -1.4
85,802 - Psyr_0079 0.46 +2.8
85,802 - Psyr_0079 0.46 +1.6
85,802 - Psyr_0079 0.46 -1.0
85,802 - Psyr_0079 0.46 +0.2
85,802 - Psyr_0079 0.46 -0.6
85,837 + Psyr_0079 0.49 +0.0
85,837 + Psyr_0079 0.49 -2.1
85,837 + Psyr_0079 0.49 +2.8
85,838 - Psyr_0079 0.49 -0.7
85,838 - Psyr_0079 0.49 -0.1
85,838 - Psyr_0079 0.49 +1.2
85,838 - Psyr_0079 0.49 +0.9
85,838 - Psyr_0079 0.49 -3.6
85,838 - Psyr_0079 0.49 -2.6
85,858 + Psyr_0079 0.51 -1.5
85,858 + Psyr_0079 0.51 -0.1
85,858 + Psyr_0079 0.51 -2.4
85,858 + Psyr_0079 0.51 -1.7
85,858 + Psyr_0079 0.51 +2.5
85,859 - Psyr_0079 0.51 -1.7
85,859 - Psyr_0079 0.51 -1.9
85,859 - Psyr_0079 0.51 -1.5
85,859 - Psyr_0079 0.51 -0.8
86,000 + Psyr_0079 0.62 -0.6
86,001 - Psyr_0079 0.62 +2.2
86,001 - Psyr_0079 0.62 +3.8
86,001 - Psyr_0079 0.62 -2.0
86,198 + Psyr_0079 0.78 -3.1
86,198 + Psyr_0079 0.78 +1.2
86,199 - Psyr_0079 0.78 -0.5
86,199 - Psyr_0079 0.78 +0.2
86,199 - Psyr_0079 0.78 +2.2
86,199 - Psyr_0079 0.78 +1.3
86,199 - Psyr_0079 0.78 +0.8
86,236 + Psyr_0079 0.81 -1.1
86,236 + Psyr_0079 0.81 -1.3
86,236 + Psyr_0079 0.81 +0.1
86,236 + Psyr_0079 0.81 -1.9
86,236 + Psyr_0079 0.81 +0.3
86,237 - Psyr_0079 0.81 +3.2
86,237 - Psyr_0079 0.81 -0.5
86,237 - Psyr_0079 0.81 -0.2
86,237 - Psyr_0079 0.81 -0.4
86,237 - Psyr_0079 0.81 +1.2
86,237 - Psyr_0079 0.81 -1.2
86,302 + Psyr_0079 0.86 -0.8
86,303 - Psyr_0079 0.86 +0.4
86,303 - Psyr_0079 0.86 -1.4
86,303 - Psyr_0079 0.86 -1.9
86,303 - Psyr_0079 0.86 +2.2
86,404 + +1.4
86,520 + -3.0
86,697 - Psyr_0080 0.28 +0.2
86,697 - Psyr_0080 0.28 +3.9
86,697 - Psyr_0080 0.28 +0.7
86,715 + Psyr_0080 0.30 +1.6
86,715 + Psyr_0080 0.30 +2.5
86,716 - Psyr_0080 0.31 -1.4
86,716 - Psyr_0080 0.31 -3.3
86,716 - Psyr_0080 0.31 +0.2
86,798 + Psyr_0080 0.41 +3.9
86,812 + Psyr_0080 0.42 -1.0
86,812 + Psyr_0080 0.42 +2.2
86,812 + Psyr_0080 0.42 -0.2
86,812 + Psyr_0080 0.42 +3.8
86,812 + Psyr_0080 0.42 +3.4
86,812 + Psyr_0080 0.42 -0.8
86,812 + Psyr_0080 0.42 +0.2
86,812 + Psyr_0080 0.42 +2.2
86,812 + Psyr_0080 0.42 -2.9
86,812 + Psyr_0080 0.42 +3.5
86,812 + Psyr_0080 0.42 -1.3
86,812 + Psyr_0080 0.42 +4.4
86,812 + Psyr_0080 0.42 +5.1
86,812 + Psyr_0080 0.42 -0.4
86,812 + Psyr_0080 0.42 -1.6
86,812 + Psyr_0080 0.42 -0.7
86,812 + Psyr_0080 0.42 +4.0
86,813 - Psyr_0080 0.42 -1.6
86,813 - Psyr_0080 0.42 -0.3
86,813 - Psyr_0080 0.42 +0.4
86,813 - Psyr_0080 0.42 +3.5
86,813 - Psyr_0080 0.42 -0.5
86,813 - Psyr_0080 0.42 +0.0
86,813 - Psyr_0080 0.42 -2.7
86,813 - Psyr_0080 0.42 +0.0
86,813 - Psyr_0080 0.42 +1.2
86,813 - Psyr_0080 0.42 +4.6
86,813 - Psyr_0080 0.42 +3.5
86,813 - Psyr_0080 0.42 -0.3
86,813 - Psyr_0080 0.42 +1.7
86,813 - Psyr_0080 0.42 -0.2
86,813 - Psyr_0080 0.42 +4.2
86,813 - Psyr_0080 0.42 -1.4
86,813 - Psyr_0080 0.42 +0.4
86,813 - Psyr_0080 0.42 +2.5
86,813 - Psyr_0080 0.42 +4.0
86,813 - Psyr_0080 0.42 -1.5
86,813 - Psyr_0080 0.42 -3.4
86,813 - Psyr_0080 0.42 -0.0
86,813 - Psyr_0080 0.42 -1.7
86,813 - Psyr_0080 0.42 +1.9
86,813 - Psyr_0080 0.42 +4.1
86,813 - Psyr_0080 0.42 -1.9
86,813 - Psyr_0080 0.42 -1.9
86,871 + Psyr_0080 0.50 -0.3
86,871 + Psyr_0080 0.50 -2.2
86,871 + Psyr_0080 0.50 +0.8
86,871 + Psyr_0080 0.50 +1.8
86,871 + Psyr_0080 0.50 -1.3
87,121 + Psyr_0080 0.80 -1.5
87,121 + Psyr_0080 0.80 -0.7
87,122 - Psyr_0080 0.80 -1.2
87,341 + -1.6
87,456 + +3.4
87,456 + -0.1
87,456 + +0.6
87,456 + +3.2
87,456 + +0.3
87,456 + -1.1
87,456 + +2.5
87,456 + -0.3
87,456 + -0.2
87,456 + -0.1
87,457 - +0.1
87,457 - -0.7
87,457 - +4.0
87,457 - +1.8
87,457 - +3.2
87,457 - -0.7
87,457 - +2.2
87,459 - +0.2

Or see this region's nucleotide sequence