Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0078

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0077 and Psyr_0078 are separated by 266 nucleotidesPsyr_0078 and Psyr_0079 are separated by 27 nucleotides Psyr_0077: Psyr_0077 - sigma54 specific transcriptional regulator, Fis family, at 82,724 to 84,043 _0077 Psyr_0078: Psyr_0078 - Beta-lactamase-like protein, at 84,310 to 85,194 _0078 Psyr_0079: Psyr_0079 - conserved hypothetical protein, at 85,222 to 86,475 _0079 Position (kb) 84 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 83.682 kb on + strand, within Psyr_0077at 83.682 kb on + strand, within Psyr_0077at 83.682 kb on + strand, within Psyr_0077at 83.682 kb on + strand, within Psyr_0077at 83.943 kb on + strandat 83.943 kb on + strandat 83.944 kb on - strandat 83.988 kb on + strandat 83.989 kb on - strandat 84.190 kb on - strandat 84.316 kb on - strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.357 kb on + strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.358 kb on - strandat 84.373 kb on + strandat 84.374 kb on - strandat 84.374 kb on - strandat 84.431 kb on - strand, within Psyr_0078at 84.431 kb on - strand, within Psyr_0078at 84.431 kb on - strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.949 kb on + strand, within Psyr_0078at 84.950 kb on - strandat 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.976 kb on + strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 84.977 kb on - strand, within Psyr_0078at 85.355 kb on - strand, within Psyr_0079at 85.355 kb on - strand, within Psyr_0079at 85.355 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.358 kb on - strand, within Psyr_0079at 85.621 kb on + strand, within Psyr_0079at 85.643 kb on - strand, within Psyr_0079at 85.690 kb on - strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.802 kb on - strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 86.000 kb on + strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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83,682 + Psyr_0077 0.73 +4.7
83,682 + Psyr_0077 0.73 -0.3
83,682 + Psyr_0077 0.73 +0.3
83,682 + Psyr_0077 0.73 -0.2
83,943 + -1.5
83,943 + +0.9
83,944 - +3.9
83,988 + +3.0
83,989 - -0.3
84,190 - -0.6
84,316 - -1.8
84,357 + +3.7
84,357 + +0.5
84,357 + -1.3
84,357 + +0.5
84,358 - +4.0
84,358 - -3.0
84,358 - +4.1
84,358 - +4.0
84,358 - +0.6
84,358 - -0.5
84,373 + -1.9
84,374 - -1.5
84,374 - -2.0
84,431 - Psyr_0078 0.14 +4.0
84,431 - Psyr_0078 0.14 +1.8
84,431 - Psyr_0078 0.14 +3.2
84,949 + Psyr_0078 0.72 -2.1
84,949 + Psyr_0078 0.72 +1.1
84,949 + Psyr_0078 0.72 -1.1
84,950 - -1.6
84,976 + Psyr_0078 0.75 +0.1
84,976 + Psyr_0078 0.75 -0.0
84,976 + Psyr_0078 0.75 +0.2
84,976 + Psyr_0078 0.75 -1.6
84,976 + Psyr_0078 0.75 +0.2
84,976 + Psyr_0078 0.75 +0.6
84,977 - Psyr_0078 0.75 -2.3
84,977 - Psyr_0078 0.75 +0.2
84,977 - Psyr_0078 0.75 +1.5
84,977 - Psyr_0078 0.75 +4.0
84,977 - Psyr_0078 0.75 +1.8
84,977 - Psyr_0078 0.75 -1.0
84,977 - Psyr_0078 0.75 -0.8
85,355 - Psyr_0079 0.11 -1.1
85,355 - Psyr_0079 0.11 -0.7
85,355 - Psyr_0079 0.11 -0.8
85,358 - Psyr_0079 0.11 +0.4
85,358 - Psyr_0079 0.11 -0.3
85,358 - Psyr_0079 0.11 +2.5
85,358 - Psyr_0079 0.11 +0.2
85,621 + Psyr_0079 0.32 -1.1
85,643 - Psyr_0079 0.34 -0.2
85,690 - Psyr_0079 0.37 -0.5
85,741 + Psyr_0079 0.41 -0.1
85,741 + Psyr_0079 0.41 -0.0
85,741 + Psyr_0079 0.41 -0.3
85,741 + Psyr_0079 0.41 +4.5
85,741 + Psyr_0079 0.41 +0.3
85,741 + Psyr_0079 0.41 +0.2
85,741 + Psyr_0079 0.41 +0.4
85,741 + Psyr_0079 0.41 -1.3
85,741 + Psyr_0079 0.41 +1.9
85,741 + Psyr_0079 0.41 +2.5
85,741 + Psyr_0079 0.41 +1.3
85,741 + Psyr_0079 0.41 +0.5
85,741 + Psyr_0079 0.41 +2.8
85,741 + Psyr_0079 0.41 +3.2
85,741 + Psyr_0079 0.41 +4.3
85,741 + Psyr_0079 0.41 +0.1
85,741 + Psyr_0079 0.41 +3.4
85,741 + Psyr_0079 0.41 -1.3
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -0.6
85,742 - Psyr_0079 0.41 +3.0
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -1.8
85,742 - Psyr_0079 0.41 +2.2
85,742 - Psyr_0079 0.41 +2.2
85,742 - Psyr_0079 0.41 -2.6
85,742 - Psyr_0079 0.41 -1.2
85,742 - Psyr_0079 0.41 -0.1
85,742 - Psyr_0079 0.41 +0.2
85,742 - Psyr_0079 0.41 -1.7
85,742 - Psyr_0079 0.41 +3.5
85,742 - Psyr_0079 0.41 -1.0
85,742 - Psyr_0079 0.41 +4.1
85,742 - Psyr_0079 0.41 -0.8
85,742 - Psyr_0079 0.41 +4.5
85,801 + Psyr_0079 0.46 +1.3
85,801 + Psyr_0079 0.46 -1.1
85,801 + Psyr_0079 0.46 -1.3
85,801 + Psyr_0079 0.46 -1.4
85,802 - Psyr_0079 0.46 +2.8
85,802 - Psyr_0079 0.46 +1.6
85,802 - Psyr_0079 0.46 -1.0
85,802 - Psyr_0079 0.46 +0.2
85,802 - Psyr_0079 0.46 -0.6
85,837 + Psyr_0079 0.49 +0.0
85,837 + Psyr_0079 0.49 -2.1
85,837 + Psyr_0079 0.49 +2.8
85,838 - Psyr_0079 0.49 -0.7
85,838 - Psyr_0079 0.49 -0.1
85,838 - Psyr_0079 0.49 +1.2
85,838 - Psyr_0079 0.49 +0.9
85,838 - Psyr_0079 0.49 -3.6
85,838 - Psyr_0079 0.49 -2.6
85,858 + Psyr_0079 0.51 -1.5
85,858 + Psyr_0079 0.51 -0.1
85,858 + Psyr_0079 0.51 -2.4
85,858 + Psyr_0079 0.51 -1.7
85,858 + Psyr_0079 0.51 +2.5
85,859 - Psyr_0079 0.51 -1.7
85,859 - Psyr_0079 0.51 -1.9
85,859 - Psyr_0079 0.51 -1.5
85,859 - Psyr_0079 0.51 -0.8
86,000 + Psyr_0079 0.62 -0.6
86,001 - Psyr_0079 0.62 +2.2
86,001 - Psyr_0079 0.62 +3.8
86,001 - Psyr_0079 0.62 -2.0

Or see this region's nucleotide sequence