Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0069

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
69,434	+		Psyr_0068	0.36	+4.1
69,435	-		Psyr_0068	0.36	+2.5
69,435	-		Psyr_0068	0.36	-1.9
69,435	-		Psyr_0068	0.36	-1.8
69,636	-		Psyr_0068	0.50	-2.0
69,650	+		Psyr_0068	0.51	+2.8
69,650	+		Psyr_0068	0.51	+3.4
70,050	+		Psyr_0068	0.81	-1.5
70,050	+		Psyr_0068	0.81	-0.4
70,050	+		Psyr_0068	0.81	+1.8
70,051	-		Psyr_0068	0.81	-0.1
70,051	-		Psyr_0068	0.81	-2.6
70,051	-		Psyr_0068	0.81	+4.0
70,238	+				-1.6
70,317	+				-0.4
70,370	+				+0.2
70,370	+				-0.8
70,371	-				-2.4
70,371	-				+3.4
70,371	-				-2.5
70,443	-				-0.7
70,443	-				+0.2
70,443	-				+3.4
70,518	+				+1.1
70,606	+		Psyr_0069	0.14	+0.4
70,606	+		Psyr_0069	0.14	+0.6
70,606	+		Psyr_0069	0.14	-2.8
70,606	+		Psyr_0069	0.14	+0.0
70,607	-		Psyr_0069	0.14	+4.7
70,672	+		Psyr_0069	0.18	+2.8
70,672	+		Psyr_0069	0.18	+3.0
70,673	-		Psyr_0069	0.18	+3.2
70,673	-		Psyr_0069	0.18	+5.0
70,673	-		Psyr_0069	0.18	+1.2
70,673	-		Psyr_0069	0.18	+1.5
70,673	-		Psyr_0069	0.18	-1.2
70,874	+		Psyr_0069	0.30	-0.5
70,892	+		Psyr_0069	0.31	-1.0
70,892	+		Psyr_0069	0.31	+4.1
70,892	+		Psyr_0069	0.31	+1.8
70,893	-		Psyr_0069	0.31	-0.2
70,893	-		Psyr_0069	0.31	+2.2
71,004	+		Psyr_0069	0.38	-0.6
71,121	-		Psyr_0069	0.45	+2.5
71,121	-		Psyr_0069	0.45	+1.5
71,173	+		Psyr_0069	0.48	-2.2
71,174	-		Psyr_0069	0.48	+0.2
71,183	+		Psyr_0069	0.49	-0.2
71,183	+		Psyr_0069	0.49	-1.8
71,184	-		Psyr_0069	0.49	-1.8
71,184	-		Psyr_0069	0.49	-1.0
71,184	-		Psyr_0069	0.49	-0.4
71,184	-		Psyr_0069	0.49	-1.6
71,294	+		Psyr_0069	0.56	-1.1
71,294	+		Psyr_0069	0.56	+1.8
71,294	+		Psyr_0069	0.56	+4.2
71,294	+		Psyr_0069	0.56	+1.2
71,294	+		Psyr_0069	0.56	-0.1
71,295	-		Psyr_0069	0.56	-2.2
71,938	-				+2.8
71,943	-				+2.5
71,970	+				+1.2
71,970	+				-0.7
72,055	-				+4.5
72,103	+				+1.0
72,103	+				-0.9
72,104	-				-1.0
72,104	-				-1.9
72,111	+				-2.3
72,111	+				+0.3
72,112	-				-0.4
72,114	+				+2.2
72,114	+				-2.3
72,114	+				+2.8
72,114	+				-0.1
72,115	-				-1.8
72,115	-				-1.7
72,115	-				-0.2
72,115	-				-1.0
72,115	-				+0.9
72,123	-				+0.9
72,162	+				-0.7
72,162	+				+0.9
72,163	-				+2.2
72,175	+				-2.0
72,186	+				-1.0
72,243	+				-0.2
72,262	-				+2.5
72,262	-				-2.4
72,320	-		Psyr_0070	0.11	-0.3
72,393	+		Psyr_0070	0.20	+0.2
72,917	+		Psyr_0070	0.83	+0.2