Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0017

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
19,703	-		Psyr_0016	0.27	-1.2
19,703	-		Psyr_0016	0.27	+1.2
19,703	-		Psyr_0016	0.27	+0.6
19,900	+		Psyr_0016	0.42	+2.2
19,901	-		Psyr_0016	0.42	-1.9
20,003	+		Psyr_0016	0.49	+5.3
20,003	+		Psyr_0016	0.49	-0.2
20,003	+		Psyr_0016	0.49	-0.6
20,011	+		Psyr_0016	0.50	-1.0
20,011	+		Psyr_0016	0.50	+1.2
20,011	+		Psyr_0016	0.50	+1.8
20,012	-		Psyr_0016	0.50	-2.3
20,012	-		Psyr_0016	0.50	+0.2
20,012	-		Psyr_0016	0.50	+1.0
20,012	-		Psyr_0016	0.50	+2.8
20,012	-		Psyr_0016	0.50	+3.9
20,012	-		Psyr_0016	0.50	+0.2
20,012	-		Psyr_0016	0.50	-3.4
20,012	-		Psyr_0016	0.50	+1.2
20,140	+		Psyr_0016	0.59	-0.1
20,140	+		Psyr_0016	0.59	+0.4
20,140	+		Psyr_0016	0.59	+0.4
20,141	-		Psyr_0016	0.59	+2.5
20,141	-		Psyr_0016	0.59	-1.0
20,185	-		Psyr_0016	0.62	+0.2
20,185	-		Psyr_0016	0.62	-1.3
20,185	-		Psyr_0016	0.62	+0.0
20,185	-		Psyr_0016	0.62	-0.1
20,185	-		Psyr_0016	0.62	-1.9
20,221	+		Psyr_0016	0.65	+0.3
20,221	+		Psyr_0016	0.65	-2.2
20,221	+		Psyr_0016	0.65	-1.8
20,225	-		Psyr_0016	0.65	-2.5
20,311	+		Psyr_0016	0.71	-1.3
20,311	+		Psyr_0016	0.71	+1.7
20,311	+		Psyr_0016	0.71	-2.0
20,311	+		Psyr_0016	0.71	-3.4
20,311	+		Psyr_0016	0.71	-1.7
20,311	+		Psyr_0016	0.71	-1.2
20,311	+		Psyr_0016	0.71	-0.8
20,311	+		Psyr_0016	0.71	+0.7
20,311	+		Psyr_0016	0.71	+0.8
20,311	+		Psyr_0016	0.71	+2.2
20,311	+		Psyr_0016	0.71	+1.2
20,311	+		Psyr_0016	0.71	+0.8
20,312	-		Psyr_0016	0.72	+1.2
20,312	-		Psyr_0016	0.72	-1.9
20,312	-		Psyr_0016	0.72	+0.2
20,312	-		Psyr_0016	0.72	-0.8
20,312	-		Psyr_0016	0.72	+2.5
20,312	-		Psyr_0016	0.72	+2.5
20,312	-		Psyr_0016	0.72	-3.3
20,312	-		Psyr_0016	0.72	-1.7
20,312	-		Psyr_0016	0.72	+4.1
20,312	-		Psyr_0016	0.72	+1.2
20,312	-		Psyr_0016	0.72	-1.5
20,343	+		Psyr_0016	0.74	-1.8
20,343	+		Psyr_0016	0.74	-1.9
20,343	+		Psyr_0016	0.74	+0.1
20,343	+		Psyr_0016	0.74	-1.8
20,343	+		Psyr_0016	0.74	+3.0
20,344	-		Psyr_0016	0.74	+2.5
20,367	-		Psyr_0016	0.76	+1.9
20,392	+		Psyr_0016	0.77	-3.4
20,392	+		Psyr_0016	0.77	+0.9
20,441	+		Psyr_0016	0.81	-0.3
20,441	+		Psyr_0016	0.81	-1.7
20,708	+				-1.5
20,757	+				-4.6
20,760	+				+3.8
20,761	-				+1.5
20,761	-				-0.6
20,875	+		Psyr_0017	0.13	+0.1
20,938	-		Psyr_0017	0.18	+2.8
20,938	-		Psyr_0017	0.18	-1.7
20,965	+		Psyr_0017	0.20	-1.4
20,966	-		Psyr_0017	0.20	+3.2
20,966	-		Psyr_0017	0.20	+3.2
20,966	-		Psyr_0017	0.20	-1.5
21,254	+		Psyr_0017	0.41	-0.2
21,255	-		Psyr_0017	0.41	+0.2
21,492	+		Psyr_0017	0.59	-2.0
21,493	-		Psyr_0017	0.59	-1.6
21,493	-		Psyr_0017	0.59	-1.3
21,789	+		Psyr_0017	0.81	-0.6
21,789	+		Psyr_0017	0.81	-2.3
21,790	-		Psyr_0017	0.81	-2.1
22,999	-				-0.3
22,999	-				-0.1