Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0008

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
8,427	-		Psyr_0007	0.19	-1.5
8,616	-		Psyr_0007	0.38	-0.0
8,616	-		Psyr_0007	0.38	-1.7
8,723	+		Psyr_0007	0.48	+1.2
8,723	+		Psyr_0007	0.48	-0.5
8,723	+		Psyr_0007	0.48	-1.5
8,723	+		Psyr_0007	0.48	-0.1
8,723	+		Psyr_0007	0.48	-1.5
8,723	+		Psyr_0007	0.48	+0.7
8,723	+		Psyr_0007	0.48	+2.2
8,723	+		Psyr_0007	0.48	-4.1
8,723	+		Psyr_0007	0.48	+0.1
8,723	+		Psyr_0007	0.48	-1.0
8,723	+		Psyr_0007	0.48	-2.5
8,723	+		Psyr_0007	0.48	-0.7
8,723	+		Psyr_0007	0.48	-1.5
8,723	+		Psyr_0007	0.48	-0.5
8,724	-		Psyr_0007	0.49	-0.5
8,724	-		Psyr_0007	0.49	+0.3
8,724	-		Psyr_0007	0.49	+0.1
8,724	-		Psyr_0007	0.49	-1.6
8,724	-		Psyr_0007	0.49	-0.9
8,724	-		Psyr_0007	0.49	-1.4
8,724	-		Psyr_0007	0.49	-1.1
8,732	+		Psyr_0007	0.49	-1.8
8,732	+		Psyr_0007	0.49	+1.0
8,732	+		Psyr_0007	0.49	-0.4
8,803	-		Psyr_0007	0.56	+0.2
8,803	-		Psyr_0007	0.56	-0.6
8,838	+		Psyr_0007	0.60	-1.0
8,838	+		Psyr_0007	0.60	+4.0
8,838	+		Psyr_0007	0.60	-2.1
8,838	+		Psyr_0007	0.60	-1.2
8,854	-		Psyr_0007	0.61	-1.9
8,917	-		Psyr_0007	0.68	-1.0
8,918	+		Psyr_0007	0.68	-0.9
8,918	+		Psyr_0007	0.68	+1.3
8,918	+		Psyr_0007	0.68	+0.2
8,918	+		Psyr_0007	0.68	-1.0
8,918	+		Psyr_0007	0.68	+0.2
8,918	+		Psyr_0007	0.68	-1.0
8,918	+		Psyr_0007	0.68	+3.5
8,918	+		Psyr_0007	0.68	-3.1
8,918	+		Psyr_0007	0.68	-2.0
8,918	+		Psyr_0007	0.68	-0.9
8,919	-		Psyr_0007	0.68	-1.3
8,919	-		Psyr_0007	0.68	-0.1
8,919	-		Psyr_0007	0.68	+1.0
8,919	-		Psyr_0007	0.68	-0.8
8,919	-		Psyr_0007	0.68	-1.9
8,919	-		Psyr_0007	0.68	-0.5
8,919	-		Psyr_0007	0.68	+0.4
8,919	-		Psyr_0007	0.68	-0.4
8,919	-		Psyr_0007	0.68	+2.2
8,919	-		Psyr_0007	0.68	-0.2
8,946	-		Psyr_0007	0.71	+3.4
8,960	+		Psyr_0007	0.72	-1.1
8,960	+		Psyr_0007	0.72	+3.4
8,960	+		Psyr_0007	0.72	-0.5
8,960	+		Psyr_0007	0.72	-3.0
8,960	+		Psyr_0007	0.72	+0.2
8,960	+		Psyr_0007	0.72	+0.6
8,960	+		Psyr_0007	0.72	-1.3
8,960	+		Psyr_0007	0.72	+0.9
8,961	-		Psyr_0007	0.72	-1.5
8,961	-		Psyr_0007	0.72	-1.7
8,961	-		Psyr_0007	0.72	+3.2
8,961	-		Psyr_0007	0.72	-2.8
8,961	-		Psyr_0007	0.72	+3.4
8,991	+		Psyr_0007	0.75	-0.2
8,991	+		Psyr_0007	0.75	+0.2
8,991	+				-3.0
8,991	+		Psyr_0007	0.75	+2.8
8,992	-		Psyr_0007	0.75	-2.4
8,992	-		Psyr_0007	0.75	-0.4
9,036	-		Psyr_0007	0.79	-1.3
9,123	+		Psyr_0007	0.88	-1.1
9,123	+		Psyr_0007	0.88	+3.7
9,123	+		Psyr_0007	0.88	-0.2
9,124	-		Psyr_0007	0.88	-0.3
9,124	-		Psyr_0007	0.88	-1.4
9,175	+				+2.1
9,176	-				+2.5
9,280	+				-0.8
9,280	+				-0.0
9,280	+				+1.2
9,301	+				+0.1
9,301	+				+0.1
9,302	-				-0.7
9,302	-				+0.4
9,305	-				+4.3
9,305	-				-0.4
9,305	-				-0.1
9,341	-				-1.8
9,419	+				-0.9
9,419	+				+0.4
9,419	+				-2.3
9,419	+				-0.3
9,419	+				-0.8
9,420	-				-2.2
9,420	-				-0.5
9,420	-				+4.2
9,420	-				-1.3
9,484	+				-3.8
9,485	-				+2.5
9,485	-				+2.5
9,551	-		Psyr_0008	0.14	-1.0
9,579	+		Psyr_0008	0.17	-1.7
9,579	+		Psyr_0008	0.17	+2.2
9,579	+		Psyr_0008	0.17	+0.2
9,579	+		Psyr_0008	0.17	+5.1
9,580	-		Psyr_0008	0.17	+2.8
9,580	-		Psyr_0008	0.17	+2.2
9,580	-		Psyr_0008	0.17	-2.6
9,580	-		Psyr_0008	0.17	-1.0
9,580	-		Psyr_0008	0.17	+0.2
9,610	+		Psyr_0008	0.21	+0.8
9,610	+		Psyr_0008	0.21	-0.2
9,610	+		Psyr_0008	0.21	+0.9
9,610	+		Psyr_0008	0.21	-0.7
9,610	+		Psyr_0008	0.21	-0.3
9,611	-		Psyr_0008	0.21	+0.2
9,619	+		Psyr_0008	0.21	-1.3
9,645	+		Psyr_0008	0.24	+1.6
9,727	+		Psyr_0008	0.33	+1.8
9,727	+		Psyr_0008	0.33	-2.3
9,728	-		Psyr_0008	0.33	-0.8
9,731	+		Psyr_0008	0.33	+3.8
9,731	+		Psyr_0008	0.33	+1.8
9,731	+		Psyr_0008	0.33	+2.8
9,731	+		Psyr_0008	0.33	+1.0
9,731	+		Psyr_0008	0.33	+3.0
9,731	+		Psyr_0008	0.33	+3.8
9,836	+		Psyr_0008	0.44	-1.3
9,837	-		Psyr_0008	0.44	-0.9
9,837	-		Psyr_0008	0.44	+0.2
10,035	+		Psyr_0008	0.64	+1.2
10,036	-		Psyr_0008	0.64	-1.4
10,048	+		Psyr_0008	0.65	+0.3
10,049	-		Psyr_0008	0.66	+1.2
10,057	+		Psyr_0008	0.66	-1.9
10,058	-		Psyr_0008	0.66	-1.3
10,078	+		Psyr_0008	0.69	+3.0
10,079	-		Psyr_0008	0.69	-0.5
10,079	-		Psyr_0008	0.69	-0.8
10,079	-		Psyr_0008	0.69	+0.4
10,079	-		Psyr_0008	0.69	-0.4
10,079	-		Psyr_0008	0.69	-0.7
10,130	+		Psyr_0008	0.74	-1.2
10,130	+		Psyr_0008	0.74	+5.6
10,130	+		Psyr_0008	0.74	-0.3
10,131	-		Psyr_0008	0.74	+3.8
10,131	-		Psyr_0008	0.74	+1.3
10,131	-		Psyr_0008	0.74	+3.0
10,175	+		Psyr_0008	0.78	+1.2
10,194	+		Psyr_0008	0.80	+0.6
10,195	-		Psyr_0008	0.81	-1.5
10,286	+		Psyr_0008	0.90	+2.1
10,287	-				-4.1
10,287	-				+3.2
10,287	-				+1.2
10,287	-				+3.2
10,287	-				-1.3
10,287	-				-1.0
10,366	+				+0.8
10,382	+				-2.5
10,399	+				+0.2
10,399	+				-0.1
10,400	-				+0.2
10,414	+				-1.8
10,455	-				-0.7
10,456	+				-0.9
10,506	-				-0.1
10,506	-				-0.7
10,656	-		Psyr_0009	0.17	-3.0
11,296	-				+0.2
11,296	-				-3.0
11,296	-				-3.1
11,296	-				+3.7
11,296	-				+0.2
11,296	-				+2.2
11,296	-				+0.2
11,300	-				-0.7
11,300	-				+0.2
11,300	-				-0.5
11,300	-				+1.5
11,300	-				+2.5
11,300	-				-0.3
11,300	-				-3.6
11,300	-				-1.0
11,300	-				-1.3
11,300	-				-0.5
11,300	-				-1.1
11,300	-				+2.5