Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_749 and Pf1N1B4_750 overlap by 4 nucleotides Pf1N1B4_750 and Pf1N1B4_751 are separated by 178 nucleotides
Pf1N1B4_749 - hypothetical protein, at 852,642 to 852,824
_749
Pf1N1B4_750 - hypothetical protein, at 852,821 to 853,477
_750
Pf1N1B4_751 - hypothetical protein, at 853,656 to 854,096
_751
Position (kb) 852
853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.771 kb on + strand at 851.951 kb on + strand at 852.050 kb on + strand at 852.102 kb on + strand at 852.138 kb on + strand at 852.220 kb on + strand at 852.220 kb on + strand at 852.267 kb on + strand at 852.267 kb on + strand at 852.271 kb on + strand at 852.393 kb on + strand at 852.393 kb on + strand at 852.393 kb on + strand at 852.394 kb on - strand at 852.405 kb on + strand at 852.405 kb on + strand at 852.405 kb on + strand at 852.497 kb on - strand at 852.515 kb on + strand at 852.516 kb on - strand at 852.562 kb on + strand at 852.794 kb on + strand, within Pf1N1B4_749 at 852.795 kb on - strand, within Pf1N1B4_749 at 852.795 kb on - strand, within Pf1N1B4_749 at 852.850 kb on + strand at 852.850 kb on + strand at 852.850 kb on + strand at 852.850 kb on + strand at 852.851 kb on - strand at 852.936 kb on + strand, within Pf1N1B4_750 at 852.936 kb on + strand, within Pf1N1B4_750 at 852.937 kb on - strand, within Pf1N1B4_750 at 853.188 kb on + strand, within Pf1N1B4_750 at 853.248 kb on + strand at 853.248 kb on + strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.249 kb on - strand, within Pf1N1B4_750 at 853.294 kb on + strand, within Pf1N1B4_750 at 853.294 kb on + strand, within Pf1N1B4_750 at 853.311 kb on - strand, within Pf1N1B4_750 at 853.494 kb on + strand at 853.494 kb on + strand at 853.495 kb on - strand at 853.495 kb on - strand at 853.529 kb on + strand at 853.530 kb on - strand at 853.530 kb on - strand at 853.598 kb on - strand at 853.818 kb on + strand, within Pf1N1B4_751 at 853.818 kb on + strand, within Pf1N1B4_751 at 853.819 kb on - strand, within Pf1N1B4_751 at 853.819 kb on - strand, within Pf1N1B4_751
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 851,771 + -1.0 851,951 + +0.2 852,050 + -0.0 852,102 + +0.2 852,138 + +1.7 852,220 + +1.2 852,220 + -0.9 852,267 + +3.6 852,267 + +1.6 852,271 + -0.1 852,393 + -1.8 852,393 + -0.0 852,393 + +0.1 852,394 - -0.7 852,405 + -2.2 852,405 + +0.1 852,405 + -1.3 852,497 - +0.2 852,515 + +1.0 852,516 - -0.3 852,562 + +0.1 852,794 + Pf1N1B4_749 0.83 -1.7 852,795 - Pf1N1B4_749 0.84 -0.8 852,795 - Pf1N1B4_749 0.84 -0.5 852,850 + -1.0 852,850 + -0.5 852,850 + -1.8 852,850 + -0.8 852,851 - +1.0 852,936 + Pf1N1B4_750 0.18 -0.6 852,936 + Pf1N1B4_750 0.18 -0.6 852,937 - Pf1N1B4_750 0.18 -1.0 853,188 + Pf1N1B4_750 0.56 +1.5 853,248 + -1.0 853,248 + Pf1N1B4_750 0.65 +0.3 853,249 - Pf1N1B4_750 0.65 +3.0 853,249 - Pf1N1B4_750 0.65 -0.0 853,249 - Pf1N1B4_750 0.65 -0.6 853,249 - Pf1N1B4_750 0.65 -0.7 853,249 - Pf1N1B4_750 0.65 -0.1 853,249 - Pf1N1B4_750 0.65 +0.4 853,249 - Pf1N1B4_750 0.65 +1.3 853,249 - Pf1N1B4_750 0.65 +0.6 853,294 + Pf1N1B4_750 0.72 +1.2 853,294 + Pf1N1B4_750 0.72 -1.2 853,311 - Pf1N1B4_750 0.75 -1.1 853,494 + +0.2 853,494 + -0.6 853,495 - -0.3 853,495 - -0.6 853,529 + -1.1 853,530 - +0.4 853,530 - +0.8 853,598 - -1.0 853,818 + Pf1N1B4_751 0.37 -1.1 853,818 + Pf1N1B4_751 0.37 -0.0 853,819 - Pf1N1B4_751 0.37 -0.8 853,819 - Pf1N1B4_751 0.37 +1.6
Or see this region's nucleotide sequence