Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_746 and Pf1N1B4_747 are separated by 325 nucleotides Pf1N1B4_747 and Pf1N1B4_748 are separated by 234 nucleotides
Pf1N1B4_746 - Alkyl hydroperoxide reductase subunit C-like protein, at 848,558 to 849,160
_746
Pf1N1B4_747 - Bacterioferritin-associated ferredoxin, at 849,486 to 849,704
_747
Pf1N1B4_748 - hypothetical protein, at 849,939 to 850,139
_748
Position (kb) 849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 848.560 kb on - strand at 848.560 kb on - strand at 848.586 kb on + strand at 848.714 kb on - strand, within Pf1N1B4_746 at 848.817 kb on + strand, within Pf1N1B4_746 at 848.817 kb on + strand, within Pf1N1B4_746 at 848.818 kb on - strand, within Pf1N1B4_746 at 849.052 kb on - strand, within Pf1N1B4_746 at 849.177 kb on + strand at 849.177 kb on + strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.178 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.181 kb on - strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.269 kb on + strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.270 kb on - strand at 849.324 kb on - strand at 849.338 kb on + strand at 849.338 kb on + strand at 849.339 kb on - strand at 849.339 kb on - strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.340 kb on + strand at 849.341 kb on - strand at 849.391 kb on + strand at 849.391 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.489 kb on + strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.490 kb on - strand at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.540 kb on + strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.541 kb on - strand, within Pf1N1B4_747 at 849.558 kb on + strand, within Pf1N1B4_747 at 849.706 kb on + strand at 849.706 kb on + strand at 849.706 kb on + strand at 849.707 kb on - strand at 849.711 kb on + strand at 849.711 kb on + strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.712 kb on - strand at 849.743 kb on + strand at 849.743 kb on + strand at 849.744 kb on - strand at 849.747 kb on + strand at 849.747 kb on + strand at 849.899 kb on + strand at 849.899 kb on + strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.900 kb on - strand at 849.901 kb on + strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.902 kb on - strand at 849.965 kb on - strand, within Pf1N1B4_748 at 849.965 kb on - strand, within Pf1N1B4_748 at 849.997 kb on - strand, within Pf1N1B4_748 at 849.997 kb on - strand, within Pf1N1B4_748 at 850.044 kb on - strand, within Pf1N1B4_748 at 850.051 kb on + strand at 850.052 kb on - strand, within Pf1N1B4_748 at 850.069 kb on - strand, within Pf1N1B4_748 at 850.071 kb on - strand, within Pf1N1B4_748 at 850.109 kb on + strand, within Pf1N1B4_748 at 850.110 kb on - strand, within Pf1N1B4_748 at 850.110 kb on - strand at 850.110 kb on - strand, within Pf1N1B4_748 at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.259 kb on + strand at 850.260 kb on - strand at 850.260 kb on - strand at 850.292 kb on + strand at 850.292 kb on + strand at 850.292 kb on + strand at 850.293 kb on - strand at 850.293 kb on - strand at 850.385 kb on + strand at 850.386 kb on - strand at 850.386 kb on - strand at 850.397 kb on - strand at 850.399 kb on + strand at 850.399 kb on + strand at 850.400 kb on - strand at 850.400 kb on - strand at 850.439 kb on + strand at 850.439 kb on + strand at 850.440 kb on - strand at 850.508 kb on + strand at 850.508 kb on + strand at 850.702 kb on - strand at 850.702 kb on - strand at 850.702 kb on - strand at 850.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 848,560 - -1.3 848,560 - +1.0 848,586 + -0.5 848,714 - Pf1N1B4_746 0.26 -1.6 848,817 + Pf1N1B4_746 0.43 -1.3 848,817 + Pf1N1B4_746 0.43 +1.7 848,818 - Pf1N1B4_746 0.43 +0.7 849,052 - Pf1N1B4_746 0.82 +0.6 849,177 + +0.1 849,177 + +0.3 849,178 - -0.3 849,178 - -0.0 849,178 - -1.3 849,178 - +0.1 849,178 - -0.0 849,178 - +0.3 849,181 - -1.1 849,181 - +1.2 849,181 - -0.0 849,269 + -0.0 849,269 + -0.2 849,269 + -0.4 849,270 - -2.2 849,270 - -0.3 849,270 - +1.0 849,270 - +0.2 849,270 - -1.3 849,270 - -0.6 849,270 - +1.0 849,270 - +1.0 849,270 - -0.7 849,270 - -0.4 849,270 - +0.8 849,324 - -0.8 849,338 + -1.6 849,338 + -1.0 849,339 - +1.5 849,339 - -0.0 849,340 + -0.6 849,340 + -0.3 849,340 + -0.4 849,341 - +0.4 849,391 + +0.1 849,391 + +0.7 849,485 + +0.5 849,485 + -1.7 849,485 + +3.0 849,485 + -0.6 849,485 + -0.6 849,485 + -1.0 849,485 + -0.6 849,485 + -1.0 849,485 + -1.3 849,485 + -1.0 849,485 + -0.6 849,485 + -0.2 849,485 + +1.3 849,485 + +1.0 849,485 + -0.6 849,485 + +0.1 849,485 + +1.0 849,485 + -0.0 849,485 + -0.1 849,485 + -0.4 849,485 + +1.0 849,485 + +0.3 849,485 + -1.6 849,485 + +2.0 849,485 + -0.2 849,485 + -0.3 849,485 + +1.0 849,485 + -0.1 849,485 + +0.9 849,485 + -1.1 849,485 + -0.2 849,485 + -2.2 849,485 + +0.5 849,485 + -0.6 849,485 + -2.5 849,485 + -1.3 849,485 + -1.0 849,485 + -1.6 849,485 + -0.6 849,486 - -0.3 849,486 - +0.1 849,486 - -0.6 849,486 - +0.4 849,486 - +0.4 849,486 - +1.4 849,486 - -1.6 849,486 - +0.9 849,486 - +0.4 849,486 - +0.7 849,486 - +0.5 849,486 - -0.0 849,486 - -0.2 849,486 - -0.0 849,486 - -1.3 849,486 - -0.2 849,486 - -0.6 849,486 - +0.4 849,486 - -1.8 849,486 - -0.6 849,486 - -0.2 849,486 - +1.3 849,486 - +0.4 849,486 - -0.6 849,486 - -0.7 849,486 - -0.0 849,486 - +1.7 849,486 - -1.3 849,486 - -0.7 849,486 - +0.2 849,486 - -1.0 849,486 - -1.3 849,486 - -2.3 849,486 - -0.3 849,486 - -1.6 849,486 - -0.4 849,486 - -2.2 849,486 - -0.7 849,489 + +0.8 849,489 + -0.4 849,489 + -1.0 849,489 + +1.3 849,489 + -0.0 849,489 + -0.9 849,489 + -0.4 849,489 + -0.6 849,489 + -2.2 849,489 + +1.0 849,489 + -0.1 849,489 + -0.7 849,489 + -0.6 849,489 + -0.8 849,489 + -1.0 849,489 + -0.0 849,489 + -1.0 849,489 + +0.3 849,489 + +0.5 849,489 + -1.6 849,489 + -0.6 849,489 + +0.4 849,489 + -0.7 849,489 + -1.3 849,489 + -2.3 849,489 + +1.4 849,489 + +2.0 849,489 + +0.6 849,489 + -2.0 849,490 - +2.3 849,490 - -0.6 849,490 - +0.5 849,490 - -1.0 849,490 - +0.5 849,490 - -2.5 849,490 - -0.0 849,490 - +0.4 849,490 - -0.6 849,490 - +0.7 849,490 - -0.6 849,490 - -1.3 849,490 - -0.6 849,490 - +0.4 849,490 - +1.2 849,490 - +1.6 849,490 - -0.4 849,490 - -0.6 849,490 - -0.0 849,540 + Pf1N1B4_747 0.25 -0.5 849,540 + Pf1N1B4_747 0.25 +0.7 849,540 + Pf1N1B4_747 0.25 -1.6 849,540 + Pf1N1B4_747 0.25 -0.4 849,540 + Pf1N1B4_747 0.25 -0.8 849,540 + Pf1N1B4_747 0.25 -0.3 849,540 + Pf1N1B4_747 0.25 +0.4 849,540 + Pf1N1B4_747 0.25 -1.6 849,540 + Pf1N1B4_747 0.25 +0.1 849,540 + Pf1N1B4_747 0.25 -1.0 849,540 + Pf1N1B4_747 0.25 -1.2 849,540 + Pf1N1B4_747 0.25 -0.2 849,541 - Pf1N1B4_747 0.25 -0.3 849,541 - Pf1N1B4_747 0.25 -1.8 849,541 - Pf1N1B4_747 0.25 -1.0 849,541 - Pf1N1B4_747 0.25 +1.3 849,541 - Pf1N1B4_747 0.25 -1.9 849,541 - Pf1N1B4_747 0.25 -1.8 849,558 + Pf1N1B4_747 0.33 -0.6 849,706 + -0.7 849,706 + -0.0 849,706 + +0.6 849,707 - -0.0 849,711 + +0.0 849,711 + -0.7 849,712 - +0.7 849,712 - +0.3 849,712 - -0.8 849,712 - +0.4 849,712 - -2.4 849,712 - +0.4 849,743 + -1.2 849,743 + -0.6 849,744 - -2.2 849,747 + -1.9 849,747 + +1.6 849,899 + -0.0 849,899 + -0.3 849,900 - -0.0 849,900 - -0.0 849,900 - +1.7 849,900 - -1.3 849,901 + -2.6 849,902 - -0.3 849,902 - +0.4 849,902 - +1.6 849,902 - -1.1 849,965 - Pf1N1B4_748 0.13 -0.4 849,965 - Pf1N1B4_748 0.13 +1.2 849,997 - Pf1N1B4_748 0.29 -0.5 849,997 - Pf1N1B4_748 0.29 -0.1 850,044 - Pf1N1B4_748 0.52 +0.7 850,051 + -0.0 850,052 - Pf1N1B4_748 0.56 -0.8 850,069 - Pf1N1B4_748 0.65 -0.2 850,071 - Pf1N1B4_748 0.66 -0.6 850,109 + Pf1N1B4_748 0.85 -0.1 850,110 - Pf1N1B4_748 0.85 -0.0 850,110 - +1.0 850,110 - Pf1N1B4_748 0.85 -1.5 850,259 + -0.0 850,259 + +1.3 850,259 + +1.0 850,259 + -1.4 850,259 + +2.4 850,260 - -0.2 850,260 - +1.0 850,292 + -0.6 850,292 + +1.4 850,292 + +1.0 850,293 - -0.2 850,293 - +0.2 850,385 + -0.6 850,386 - +1.8 850,386 - -0.6 850,397 - +0.3 850,399 + +0.8 850,399 + -2.3 850,400 - -1.0 850,400 - -1.3 850,439 + +0.5 850,439 + -0.4 850,440 - +1.3 850,508 + -0.0 850,508 + +0.4 850,702 - -0.3 850,702 - -1.3 850,702 - -0.7 850,702 - +1.3
Or see this region's nucleotide sequence