Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_730 and Pf1N1B4_731 are separated by 130 nucleotides Pf1N1B4_731 and Pf1N1B4_732 are separated by 55 nucleotides Pf1N1B4_732 and Pf1N1B4_733 are separated by 108 nucleotides
Pf1N1B4_730 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 833,064 to 833,822
_730
Pf1N1B4_731 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 833,953 to 835,047
_731
Pf1N1B4_732 - hypothetical protein, at 835,103 to 835,306
_732
Pf1N1B4_733 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 835,415 to 837,466
_733
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.993 kb on + strand at 833.019 kb on + strand at 833.020 kb on - strand at 833.020 kb on - strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.049 kb on + strand at 833.083 kb on + strand at 833.084 kb on - strand at 833.113 kb on + strand at 833.113 kb on + strand at 833.133 kb on + strand at 833.133 kb on + strand at 833.238 kb on + strand, within Pf1N1B4_730 at 833.239 kb on - strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.276 kb on + strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.505 kb on - strand at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.757 kb on + strand at 833.758 kb on - strand at 833.758 kb on - strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.779 kb on - strand at 833.779 kb on - strand at 833.820 kb on + strand at 833.820 kb on + strand at 833.821 kb on - strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.884 kb on - strand at 833.884 kb on - strand at 833.897 kb on + strand at 833.898 kb on - strand at 833.898 kb on - strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.900 kb on - strand at 833.954 kb on + strand at 833.955 kb on - strand at 834.903 kb on - strand, within Pf1N1B4_731 at 834.903 kb on - strand, within Pf1N1B4_731 at 834.903 kb on - strand, within Pf1N1B4_731 at 835.090 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.099 kb on + strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.107 kb on - strand at 835.189 kb on + strand, within Pf1N1B4_732
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 832,993 + -1.0 833,019 + -0.8 833,020 - -1.2 833,020 - -2.6 833,024 + -0.6 833,024 + -1.0 833,024 + +0.3 833,024 + -0.6 833,025 - +0.4 833,025 - -0.1 833,025 - -0.6 833,025 - -0.8 833,025 - +0.3 833,025 - -0.1 833,049 + +1.0 833,083 + +1.0 833,084 - +1.0 833,113 + -0.0 833,113 + -0.0 833,133 + -0.2 833,133 + +0.6 833,238 + Pf1N1B4_730 0.23 +0.1 833,239 - -0.0 833,276 + Pf1N1B4_730 0.28 -0.0 833,276 + +1.0 833,276 + Pf1N1B4_730 0.28 -0.6 833,504 + Pf1N1B4_730 0.58 -0.6 833,504 + Pf1N1B4_730 0.58 -0.3 833,504 + Pf1N1B4_730 0.58 -1.2 833,504 + Pf1N1B4_730 0.58 -0.6 833,504 + Pf1N1B4_730 0.58 -0.8 833,504 + Pf1N1B4_730 0.58 -0.9 833,505 - -0.0 833,547 + Pf1N1B4_730 0.64 +1.0 833,547 + Pf1N1B4_730 0.64 +0.4 833,547 + Pf1N1B4_730 0.64 +1.0 833,547 + Pf1N1B4_730 0.64 -0.6 833,548 - Pf1N1B4_730 0.64 +0.3 833,548 - Pf1N1B4_730 0.64 -0.3 833,548 - Pf1N1B4_730 0.64 +0.4 833,757 + +0.6 833,758 - -0.0 833,758 - -0.0 833,775 + +0.3 833,775 + +0.9 833,775 + +0.8 833,775 + +0.3 833,775 + -1.5 833,776 - -1.6 833,776 - -1.2 833,776 - +0.3 833,776 - -0.6 833,778 + -0.0 833,778 + -1.6 833,778 + +0.6 833,778 + +0.4 833,778 + +1.0 833,778 + -0.5 833,778 + +0.1 833,779 - -1.3 833,779 - -1.6 833,820 + +0.7 833,820 + -1.1 833,821 - -1.2 833,883 + -0.0 833,883 + +0.3 833,883 + -1.8 833,884 - +0.7 833,884 - -0.0 833,897 + +1.4 833,898 - -0.6 833,898 - -0.7 833,899 + -1.0 833,899 + -1.2 833,899 + +0.6 833,900 - -2.3 833,954 + -0.4 833,955 - -0.5 834,903 - Pf1N1B4_731 0.87 -2.5 834,903 - Pf1N1B4_731 0.87 -1.2 834,903 - Pf1N1B4_731 0.87 -0.4 835,090 + -0.2 835,099 + +0.4 835,099 + -0.7 835,099 + +0.2 835,099 + -0.7 835,099 + +2.3 835,099 + -1.2 835,099 + +1.0 835,099 + +0.4 835,099 + +0.4 835,100 - -0.2 835,100 - -2.2 835,100 - -0.1 835,100 - -1.0 835,100 - +1.0 835,100 - -0.6 835,100 - -1.0 835,100 - -1.3 835,106 + +1.0 835,106 + -1.3 835,106 + +1.7 835,106 + -0.6 835,106 + +1.0 835,107 - -1.3 835,107 - -0.0 835,107 - -1.2 835,107 - -1.8 835,107 - -0.8 835,107 - -1.3 835,107 - -0.0 835,189 + Pf1N1B4_732 0.42 +0.7
Or see this region's nucleotide sequence