Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_668 and Pf1N1B4_669 are separated by 169 nucleotides Pf1N1B4_669 and Pf1N1B4_670 overlap by 4 nucleotides Pf1N1B4_670 and Pf1N1B4_671 overlap by 14 nucleotides
Pf1N1B4_668 - Exodeoxyribonuclease I (EC 3.1.11.1), at 763,746 to 765,176
_668
Pf1N1B4_669 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 765,346 to 766,071
_669
Pf1N1B4_670 - FIG01248689: hypothetical protein, at 766,068 to 767,045
_670
Pf1N1B4_671 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 767,032 to 768,576
_671
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.479 kb on + strand, within Pf1N1B4_668 at 764.479 kb on + strand, within Pf1N1B4_668 at 764.479 kb on + strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.480 kb on - strand, within Pf1N1B4_668 at 764.511 kb on - strand, within Pf1N1B4_668 at 764.585 kb on - strand, within Pf1N1B4_668 at 764.585 kb on - strand, within Pf1N1B4_668 at 764.585 kb on - strand, within Pf1N1B4_668 at 764.586 kb on + strand, within Pf1N1B4_668 at 764.586 kb on + strand, within Pf1N1B4_668 at 764.586 kb on + strand at 764.587 kb on - strand, within Pf1N1B4_668 at 764.587 kb on - strand, within Pf1N1B4_668 at 764.587 kb on - strand, within Pf1N1B4_668 at 764.628 kb on - strand, within Pf1N1B4_668 at 764.765 kb on - strand, within Pf1N1B4_668 at 764.765 kb on - strand, within Pf1N1B4_668 at 764.827 kb on + strand, within Pf1N1B4_668 at 764.991 kb on - strand at 765.049 kb on + strand at 765.070 kb on - strand at 765.151 kb on + strand at 765.152 kb on - strand at 765.158 kb on - strand at 765.209 kb on + strand at 765.210 kb on - strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.219 kb on + strand at 765.220 kb on - strand at 765.220 kb on - strand at 765.220 kb on - strand at 765.220 kb on - strand at 765.220 kb on - strand at 765.276 kb on + strand at 765.276 kb on + strand at 765.276 kb on + strand at 765.276 kb on + strand at 765.276 kb on + strand at 765.276 kb on + strand at 765.277 kb on - strand at 765.277 kb on - strand at 765.277 kb on - strand at 765.277 kb on - strand at 765.277 kb on - strand at 765.277 kb on - strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.280 kb on + strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.281 kb on - strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.284 kb on + strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.285 kb on - strand at 765.311 kb on - strand at 765.598 kb on + strand at 765.598 kb on + strand, within Pf1N1B4_669 at 765.598 kb on + strand, within Pf1N1B4_669 at 765.598 kb on + strand, within Pf1N1B4_669 at 765.598 kb on + strand, within Pf1N1B4_669 at 765.598 kb on + strand, within Pf1N1B4_669 at 765.599 kb on - strand, within Pf1N1B4_669 at 765.599 kb on - strand, within Pf1N1B4_669 at 765.599 kb on - strand, within Pf1N1B4_669 at 765.599 kb on - strand, within Pf1N1B4_669 at 765.599 kb on - strand, within Pf1N1B4_669 at 765.751 kb on + strand, within Pf1N1B4_669 at 765.987 kb on - strand, within Pf1N1B4_669 at 766.230 kb on + strand, within Pf1N1B4_670 at 766.397 kb on - strand, within Pf1N1B4_670 at 766.434 kb on + strand, within Pf1N1B4_670 at 766.434 kb on + strand, within Pf1N1B4_670 at 766.435 kb on - strand, within Pf1N1B4_670 at 766.435 kb on - strand at 766.435 kb on - strand, within Pf1N1B4_670 at 766.435 kb on - strand, within Pf1N1B4_670 at 766.435 kb on - strand, within Pf1N1B4_670 at 766.455 kb on + strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.456 kb on - strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.500 kb on + strand, within Pf1N1B4_670 at 766.501 kb on - strand, within Pf1N1B4_670 at 766.501 kb on - strand, within Pf1N1B4_670 at 766.501 kb on - strand, within Pf1N1B4_670 at 766.501 kb on - strand, within Pf1N1B4_670 at 766.573 kb on - strand, within Pf1N1B4_670 at 766.573 kb on - strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.575 kb on + strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.576 kb on - strand, within Pf1N1B4_670 at 766.659 kb on + strand, within Pf1N1B4_670 at 766.659 kb on + strand, within Pf1N1B4_670 at 766.660 kb on - strand, within Pf1N1B4_670 at 766.660 kb on - strand, within Pf1N1B4_670 at 766.660 kb on - strand, within Pf1N1B4_670 at 766.660 kb on - strand, within Pf1N1B4_670 at 766.701 kb on + strand, within Pf1N1B4_670 at 766.701 kb on + strand at 766.701 kb on + strand, within Pf1N1B4_670 at 766.701 kb on + strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.702 kb on - strand, within Pf1N1B4_670 at 766.927 kb on - strand, within Pf1N1B4_670 at 766.965 kb on + strand at 767.004 kb on + strand at 767.004 kb on + strand at 767.004 kb on + strand at 767.005 kb on - strand at 767.005 kb on - strand at 767.008 kb on + strand at 767.008 kb on + strand at 767.008 kb on + strand at 767.008 kb on + strand at 767.009 kb on - strand at 767.009 kb on - strand at 767.009 kb on - strand at 767.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 764,479 + Pf1N1B4_668 0.51 -0.0 764,479 + Pf1N1B4_668 0.51 +0.7 764,479 + Pf1N1B4_668 0.51 +0.7 764,480 - Pf1N1B4_668 0.51 +0.6 764,480 - Pf1N1B4_668 0.51 +0.0 764,480 - Pf1N1B4_668 0.51 -1.8 764,480 - Pf1N1B4_668 0.51 -0.5 764,480 - Pf1N1B4_668 0.51 +0.5 764,480 - Pf1N1B4_668 0.51 +0.4 764,480 - Pf1N1B4_668 0.51 +0.2 764,511 - Pf1N1B4_668 0.53 -1.4 764,585 - Pf1N1B4_668 0.59 +1.3 764,585 - Pf1N1B4_668 0.59 -0.4 764,585 - Pf1N1B4_668 0.59 -1.3 764,586 + Pf1N1B4_668 0.59 -0.4 764,586 + Pf1N1B4_668 0.59 -1.6 764,586 + +1.0 764,587 - Pf1N1B4_668 0.59 -0.4 764,587 - Pf1N1B4_668 0.59 +0.4 764,587 - Pf1N1B4_668 0.59 -1.6 764,628 - Pf1N1B4_668 0.62 +0.1 764,765 - Pf1N1B4_668 0.71 +1.0 764,765 - Pf1N1B4_668 0.71 +0.7 764,827 + Pf1N1B4_668 0.76 -0.5 764,991 - -0.6 765,049 + +0.5 765,070 - -1.0 765,151 + +1.0 765,152 - -1.9 765,158 - +0.4 765,209 + +0.3 765,210 - -2.6 765,219 + -1.0 765,219 + +1.0 765,219 + -1.0 765,219 + -0.2 765,219 + +0.5 765,219 + +1.0 765,219 + -0.8 765,219 + +0.7 765,220 - -0.5 765,220 - +1.5 765,220 - -0.4 765,220 - +0.1 765,220 - -0.6 765,276 + +2.3 765,276 + -0.0 765,276 + +1.7 765,276 + +1.8 765,276 + +0.7 765,276 + -0.0 765,277 - +0.4 765,277 - +1.2 765,277 - +0.6 765,277 - -0.0 765,277 - +1.2 765,277 - -1.0 765,280 + -0.6 765,280 + -2.7 765,280 + -0.3 765,280 + -1.4 765,280 + +1.2 765,280 + +0.2 765,280 + -0.3 765,280 + +0.1 765,280 + -1.2 765,280 + -0.0 765,280 + +1.0 765,280 + -0.6 765,280 + -0.6 765,280 + +0.5 765,280 + -0.7 765,280 + +1.0 765,280 + -0.3 765,280 + -2.4 765,280 + -0.8 765,281 - -2.7 765,281 - +0.6 765,281 - -0.6 765,281 - +0.4 765,281 - -0.2 765,281 - +0.4 765,281 - -2.0 765,281 - -0.7 765,281 - -0.0 765,281 - +0.2 765,281 - +0.4 765,281 - -0.0 765,281 - +0.5 765,281 - +1.8 765,281 - +1.0 765,281 - -0.8 765,281 - -0.7 765,281 - -1.6 765,281 - +0.4 765,281 - -0.6 765,281 - -0.4 765,284 + -1.0 765,284 + -0.3 765,284 + -1.5 765,284 + -0.6 765,284 + +0.5 765,284 + -0.6 765,284 + +0.5 765,284 + +0.4 765,284 + -2.0 765,284 + -0.0 765,284 + -0.8 765,284 + -2.4 765,284 + +0.2 765,284 + -2.4 765,284 + -0.3 765,284 + +0.8 765,284 + -0.3 765,285 - +0.6 765,285 - -0.9 765,285 - +0.4 765,285 - +1.2 765,285 - +0.5 765,285 - +0.0 765,285 - -0.0 765,285 - -1.4 765,285 - -0.0 765,285 - -0.5 765,285 - +1.1 765,285 - -1.2 765,285 - +1.2 765,285 - +0.6 765,285 - -0.0 765,285 - -0.0 765,311 - -0.6 765,598 + -0.0 765,598 + Pf1N1B4_669 0.35 -0.0 765,598 + Pf1N1B4_669 0.35 -1.4 765,598 + Pf1N1B4_669 0.35 -1.2 765,598 + Pf1N1B4_669 0.35 -0.8 765,598 + Pf1N1B4_669 0.35 -0.0 765,599 - Pf1N1B4_669 0.35 -0.2 765,599 - Pf1N1B4_669 0.35 -0.6 765,599 - Pf1N1B4_669 0.35 -1.2 765,599 - Pf1N1B4_669 0.35 -0.0 765,599 - Pf1N1B4_669 0.35 +0.7 765,751 + Pf1N1B4_669 0.56 -2.9 765,987 - Pf1N1B4_669 0.88 +2.0 766,230 + Pf1N1B4_670 0.17 +0.3 766,397 - Pf1N1B4_670 0.34 -1.4 766,434 + Pf1N1B4_670 0.37 +1.3 766,434 + Pf1N1B4_670 0.37 +2.3 766,435 - Pf1N1B4_670 0.38 -0.0 766,435 - -0.0 766,435 - Pf1N1B4_670 0.38 +2.0 766,435 - Pf1N1B4_670 0.38 -0.0 766,435 - Pf1N1B4_670 0.38 -0.6 766,455 + Pf1N1B4_670 0.40 -1.3 766,456 - Pf1N1B4_670 0.40 -1.6 766,456 - Pf1N1B4_670 0.40 -0.0 766,456 - Pf1N1B4_670 0.40 +1.2 766,456 - Pf1N1B4_670 0.40 +0.6 766,456 - Pf1N1B4_670 0.40 -0.0 766,456 - Pf1N1B4_670 0.40 +0.5 766,500 + Pf1N1B4_670 0.44 +0.4 766,500 + Pf1N1B4_670 0.44 -1.0 766,500 + Pf1N1B4_670 0.44 -1.0 766,500 + Pf1N1B4_670 0.44 +0.4 766,500 + Pf1N1B4_670 0.44 -0.4 766,500 + Pf1N1B4_670 0.44 +0.4 766,501 - Pf1N1B4_670 0.44 -1.4 766,501 - Pf1N1B4_670 0.44 +0.1 766,501 - Pf1N1B4_670 0.44 -1.1 766,501 - Pf1N1B4_670 0.44 -0.0 766,573 - Pf1N1B4_670 0.52 +1.0 766,573 - Pf1N1B4_670 0.52 +0.6 766,575 + Pf1N1B4_670 0.52 -0.5 766,575 + Pf1N1B4_670 0.52 +3.3 766,575 + Pf1N1B4_670 0.52 -0.1 766,575 + Pf1N1B4_670 0.52 -2.2 766,575 + Pf1N1B4_670 0.52 +0.2 766,575 + Pf1N1B4_670 0.52 +1.0 766,575 + Pf1N1B4_670 0.52 +0.3 766,575 + Pf1N1B4_670 0.52 -1.6 766,575 + Pf1N1B4_670 0.52 -2.0 766,575 + Pf1N1B4_670 0.52 -0.3 766,576 - Pf1N1B4_670 0.52 +1.0 766,576 - Pf1N1B4_670 0.52 +0.2 766,576 - Pf1N1B4_670 0.52 +1.0 766,576 - Pf1N1B4_670 0.52 -0.5 766,576 - Pf1N1B4_670 0.52 -0.6 766,576 - Pf1N1B4_670 0.52 -0.5 766,576 - Pf1N1B4_670 0.52 -0.2 766,576 - Pf1N1B4_670 0.52 -0.1 766,576 - Pf1N1B4_670 0.52 +1.3 766,659 + Pf1N1B4_670 0.60 -0.0 766,659 + Pf1N1B4_670 0.60 -0.6 766,660 - Pf1N1B4_670 0.61 -0.4 766,660 - Pf1N1B4_670 0.61 -1.0 766,660 - Pf1N1B4_670 0.61 -1.6 766,660 - Pf1N1B4_670 0.61 +2.0 766,701 + Pf1N1B4_670 0.65 +0.4 766,701 + +0.4 766,701 + Pf1N1B4_670 0.65 +0.3 766,701 + Pf1N1B4_670 0.65 -0.0 766,702 - Pf1N1B4_670 0.65 +0.8 766,702 - +0.5 766,702 - Pf1N1B4_670 0.65 +1.0 766,702 - Pf1N1B4_670 0.65 -1.0 766,702 - Pf1N1B4_670 0.65 -0.9 766,702 - Pf1N1B4_670 0.65 -0.1 766,702 - Pf1N1B4_670 0.65 +0.6 766,702 - Pf1N1B4_670 0.65 -2.2 766,927 - Pf1N1B4_670 0.88 -2.2 766,965 + +0.2 767,004 + -0.0 767,004 + +0.4 767,004 + -0.4 767,005 - -0.4 767,005 - -1.9 767,008 + -0.4 767,008 + +1.0 767,008 + -0.6 767,008 + +0.5 767,009 - -0.4 767,009 - +0.4 767,009 - -0.3 767,009 - +0.2
Or see this region's nucleotide sequence