Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_608

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotidesPf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotidesPf1N1B4_609 and Pf1N1B4_610 are separated by 177 nucleotides Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812 _607 Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530 _608 Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090 _609 Pf1N1B4_610 - Methyl-accepting chemotaxis transducer, at 703,268 to 705,406 _610 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2at 701.012 kb on + strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.030 kb on + strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.088 kb on - strandat 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.165 kb on + strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.222 kb on + strand, within Pf1N1B4_607at 701.223 kb on - strandat 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strandat 701.232 kb on - strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.379 kb on - strand, within Pf1N1B4_607at 701.381 kb on - strand, within Pf1N1B4_607at 701.400 kb on - strand, within Pf1N1B4_607at 701.400 kb on - strand, within Pf1N1B4_607at 701.477 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.493 kb on - strand, within Pf1N1B4_607at 701.493 kb on - strand, within Pf1N1B4_607at 701.624 kb on + strandat 701.624 kb on + strandat 701.624 kb on + strandat 701.624 kb on + strandat 701.625 kb on - strandat 701.663 kb on + strandat 701.663 kb on + strandat 701.663 kb on + strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.684 kb on + strandat 701.684 kb on + strandat 701.685 kb on - strandat 701.685 kb on - strandat 702.075 kb on + strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.230 kb on + strand, within Pf1N1B4_608at 702.487 kb on + strandat 702.487 kb on + strandat 702.488 kb on - strandat 702.504 kb on + strandat 702.604 kb on + strandat 702.682 kb on - strandat 702.741 kb on + strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strandat 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 703.160 kb on + strandat 703.160 kb on + strandat 703.160 kb on + strandat 703.160 kb on + strandat 703.161 kb on - strandat 703.267 kb on + strandat 703.267 kb on + strandat 703.268 kb on - strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.361 kb on + strandat 703.362 kb on - strandat 703.362 kb on - strandat 703.362 kb on - strandat 703.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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701,012 + Pf1N1B4_607 0.69 +1.0
701,013 - Pf1N1B4_607 0.69 +0.2
701,013 - Pf1N1B4_607 0.69 +0.1
701,013 - Pf1N1B4_607 0.69 -0.9
701,013 - Pf1N1B4_607 0.69 -2.1
701,030 + Pf1N1B4_607 0.69 -0.0
701,031 - Pf1N1B4_607 0.69 +0.4
701,031 - Pf1N1B4_607 0.69 -0.4
701,031 - Pf1N1B4_607 0.69 -0.6
701,087 + Pf1N1B4_607 0.72 -1.4
701,087 + Pf1N1B4_607 0.72 +0.2
701,087 + Pf1N1B4_607 0.72 +0.3
701,087 + Pf1N1B4_607 0.72 +0.4
701,087 + Pf1N1B4_607 0.72 -0.4
701,087 + Pf1N1B4_607 0.72 -1.3
701,087 + Pf1N1B4_607 0.72 -0.4
701,088 - -0.0
701,088 - Pf1N1B4_607 0.72 -2.4
701,088 - Pf1N1B4_607 0.72 -0.7
701,088 - Pf1N1B4_607 0.72 -0.3
701,088 - Pf1N1B4_607 0.72 -0.5
701,088 - Pf1N1B4_607 0.72 -0.4
701,165 + Pf1N1B4_607 0.75 -2.0
701,166 - Pf1N1B4_607 0.75 +1.7
701,166 - Pf1N1B4_607 0.75 -0.2
701,166 - Pf1N1B4_607 0.75 +1.0
701,222 + Pf1N1B4_607 0.77 -0.4
701,223 - -1.0
701,223 - Pf1N1B4_607 0.77 -1.5
701,223 - Pf1N1B4_607 0.77 -1.0
701,223 - Pf1N1B4_607 0.77 -0.1
701,223 - Pf1N1B4_607 0.77 +1.0
701,223 - -0.4
701,232 - Pf1N1B4_607 0.77 -1.0
701,378 + Pf1N1B4_607 0.83 +0.1
701,378 + Pf1N1B4_607 0.83 -2.6
701,378 + Pf1N1B4_607 0.83 -0.3
701,378 + Pf1N1B4_607 0.83 -1.0
701,378 + Pf1N1B4_607 0.83 +0.2
701,378 + Pf1N1B4_607 0.83 -0.0
701,379 - Pf1N1B4_607 0.83 -0.6
701,381 - Pf1N1B4_607 0.83 -1.9
701,400 - Pf1N1B4_607 0.84 +0.2
701,400 - Pf1N1B4_607 0.84 -0.2
701,477 + Pf1N1B4_607 0.87 -0.6
701,492 + Pf1N1B4_607 0.87 +1.8
701,492 + Pf1N1B4_607 0.87 -1.0
701,492 + Pf1N1B4_607 0.87 -0.3
701,493 - Pf1N1B4_607 0.88 +0.8
701,493 - Pf1N1B4_607 0.88 +0.5
701,624 + +1.4
701,624 + +1.0
701,624 + +0.3
701,624 + -1.4
701,625 - +1.5
701,663 + +0.4
701,663 + +1.0
701,663 + -0.4
701,664 - -1.6
701,664 - +0.1
701,664 - -1.2
701,664 - +1.1
701,684 + -0.6
701,684 + -0.6
701,685 - +1.0
701,685 - -0.0
702,075 + Pf1N1B4_608 0.25 +1.0
702,076 - Pf1N1B4_608 0.25 +0.6
702,076 - Pf1N1B4_608 0.25 +2.5
702,230 + Pf1N1B4_608 0.51 +0.8
702,487 + +1.0
702,487 + -0.1
702,488 - +0.2
702,504 + -1.6
702,604 + -1.4
702,682 - -0.0
702,741 + Pf1N1B4_609 0.12 +0.5
702,766 - Pf1N1B4_609 0.18 -0.9
702,766 - Pf1N1B4_609 0.18 +0.3
702,766 - Pf1N1B4_609 0.18 -2.0
702,766 - Pf1N1B4_609 0.18 -0.5
702,766 - +1.0
702,766 - Pf1N1B4_609 0.18 +0.7
702,766 - Pf1N1B4_609 0.18 -1.3
703,160 + -1.6
703,160 + +1.0
703,160 + +1.0
703,160 + -0.4
703,161 - +0.2
703,267 + -1.6
703,267 + -1.6
703,268 - -0.3
703,361 + -0.8
703,361 + +1.2
703,361 + -0.6
703,361 + -0.0
703,362 - -0.9
703,362 - -2.5
703,362 - +0.1
703,418 - -0.9

Or see this region's nucleotide sequence