Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotides Pf1N1B4_580 and Pf1N1B4_581 overlap by 14 nucleotides Pf1N1B4_581 and Pf1N1B4_582 are separated by 157 nucleotides Pf1N1B4_582 and Pf1N1B4_583 are separated by 201 nucleotides
Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363
_579
Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581
_580
Pf1N1B4_581 - membrane protein, putative, at 672,568 to 674,556
_581
Pf1N1B4_582 - FIG00959696: hypothetical protein, at 674,714 to 675,181
_582
Pf1N1B4_583 - FIG00957748: hypothetical protein, at 675,383 to 675,622
_583
Position (kb) 672
673
674
675 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 671.665 kb on - strand, within Pf1N1B4_579 at 671.665 kb on - strand, within Pf1N1B4_579 at 671.789 kb on + strand, within Pf1N1B4_579 at 671.801 kb on + strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.857 kb on - strand, within Pf1N1B4_579 at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.284 kb on + strand at 672.350 kb on - strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.364 kb on - strand at 672.364 kb on - strand at 672.377 kb on - strand at 672.378 kb on + strand at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 673.051 kb on - strand, within Pf1N1B4_581 at 673.078 kb on + strand, within Pf1N1B4_581 at 673.174 kb on - strand at 673.174 kb on - strand, within Pf1N1B4_581 at 673.174 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.644 kb on - strand, within Pf1N1B4_581 at 673.946 kb on - strand, within Pf1N1B4_581 at 673.946 kb on - strand, within Pf1N1B4_581 at 673.955 kb on - strand, within Pf1N1B4_581 at 673.963 kb on - strand, within Pf1N1B4_581 at 674.161 kb on - strand, within Pf1N1B4_581 at 674.213 kb on + strand, within Pf1N1B4_581 at 674.251 kb on - strand, within Pf1N1B4_581 at 674.410 kb on - strand at 674.558 kb on + strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.559 kb on - strand at 674.634 kb on + strand at 674.656 kb on - strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.715 kb on + strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.716 kb on - strand at 674.781 kb on + strand, within Pf1N1B4_582 at 674.850 kb on + strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 674.851 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.056 kb on - strand, within Pf1N1B4_582 at 675.149 kb on + strand at 675.150 kb on - strand at 675.150 kb on - strand at 675.166 kb on + strand at 675.167 kb on - strand at 675.167 kb on - strand at 675.169 kb on + strand at 675.215 kb on + strand at 675.215 kb on + strand at 675.215 kb on + strand at 675.216 kb on - strand at 675.216 kb on - strand at 675.220 kb on - strand at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583 at 675.441 kb on - strand, within Pf1N1B4_583
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 671,665 - Pf1N1B4_579 0.19 +0.2 671,665 - Pf1N1B4_579 0.19 -0.8 671,789 + Pf1N1B4_579 0.33 -0.6 671,801 + Pf1N1B4_579 0.35 -2.5 671,802 - Pf1N1B4_579 0.35 +0.4 671,802 - Pf1N1B4_579 0.35 +0.9 671,802 - Pf1N1B4_579 0.35 +3.3 671,802 - Pf1N1B4_579 0.35 -1.1 671,802 - -1.1 671,852 + Pf1N1B4_579 0.41 +0.1 671,852 + Pf1N1B4_579 0.41 -0.2 671,852 + Pf1N1B4_579 0.41 +0.4 671,853 - Pf1N1B4_579 0.41 -0.1 671,853 - Pf1N1B4_579 0.41 +0.6 671,853 - Pf1N1B4_579 0.41 -0.6 671,853 - Pf1N1B4_579 0.41 -1.2 671,853 - Pf1N1B4_579 0.41 -0.2 671,856 + Pf1N1B4_579 0.41 -0.6 671,856 + Pf1N1B4_579 0.41 +0.9 671,857 - Pf1N1B4_579 0.41 -0.4 672,281 + +0.4 672,281 + +0.9 672,281 + -1.5 672,281 + +0.6 672,281 + +0.5 672,281 + -0.1 672,281 + +0.4 672,281 + -0.4 672,281 + -0.1 672,281 + +0.0 672,282 - +0.5 672,282 - -1.1 672,282 - +0.2 672,282 - +0.7 672,284 + +1.1 672,350 - +0.5 672,357 + -0.8 672,357 + +0.9 672,357 + -2.5 672,358 - -0.3 672,358 - -0.1 672,358 - -0.9 672,358 - -1.4 672,358 - -1.4 672,358 - -1.4 672,358 - +0.2 672,358 - -0.6 672,358 - -1.4 672,358 - -0.3 672,364 - -1.6 672,364 - -0.6 672,377 - -1.1 672,378 + -0.5 672,412 - Pf1N1B4_580 0.18 -1.0 672,412 - Pf1N1B4_580 0.18 -0.5 672,412 - Pf1N1B4_580 0.18 +2.9 672,412 - Pf1N1B4_580 0.18 -0.2 672,421 + Pf1N1B4_580 0.22 +0.5 672,421 + Pf1N1B4_580 0.22 -0.2 672,421 + -0.4 672,421 + Pf1N1B4_580 0.22 +0.4 672,421 + Pf1N1B4_580 0.22 +0.5 672,421 + Pf1N1B4_580 0.22 -2.1 672,422 - Pf1N1B4_580 0.23 +0.7 672,422 - Pf1N1B4_580 0.23 +0.4 672,422 - Pf1N1B4_580 0.23 +0.7 672,422 - Pf1N1B4_580 0.23 -1.2 672,422 - Pf1N1B4_580 0.23 -0.4 672,422 - Pf1N1B4_580 0.23 +2.3 673,051 - Pf1N1B4_581 0.24 -0.6 673,078 + Pf1N1B4_581 0.26 -1.7 673,174 - -0.6 673,174 - Pf1N1B4_581 0.30 +0.5 673,174 - Pf1N1B4_581 0.30 -1.1 673,644 - Pf1N1B4_581 0.54 -0.1 673,644 - Pf1N1B4_581 0.54 -1.5 673,644 - Pf1N1B4_581 0.54 -0.7 673,644 - Pf1N1B4_581 0.54 -1.1 673,946 - Pf1N1B4_581 0.69 -2.1 673,946 - Pf1N1B4_581 0.69 +1.1 673,955 - Pf1N1B4_581 0.70 -1.4 673,963 - Pf1N1B4_581 0.70 -0.3 674,161 - Pf1N1B4_581 0.80 +0.9 674,213 + Pf1N1B4_581 0.83 -1.2 674,251 - Pf1N1B4_581 0.85 -0.4 674,410 - +0.3 674,558 + +0.7 674,559 - -0.1 674,559 - -2.5 674,559 - -0.8 674,559 - +0.2 674,559 - +0.9 674,634 + +0.5 674,656 - +0.2 674,715 + -0.4 674,715 + -0.6 674,715 + +0.4 674,715 + -0.9 674,715 + +2.4 674,716 - -0.5 674,716 - -0.6 674,716 - -2.4 674,716 - +0.6 674,716 - +0.3 674,716 - -1.1 674,716 - -2.5 674,716 - +0.2 674,716 - +0.4 674,781 + Pf1N1B4_582 0.14 +0.5 674,850 + Pf1N1B4_582 0.29 +0.9 674,851 - Pf1N1B4_582 0.29 -0.8 674,851 - Pf1N1B4_582 0.29 -1.3 674,851 - Pf1N1B4_582 0.29 -0.1 674,851 - Pf1N1B4_582 0.29 -0.1 674,851 - Pf1N1B4_582 0.29 +1.4 674,851 - Pf1N1B4_582 0.29 +0.7 675,056 - Pf1N1B4_582 0.73 -1.1 675,056 - Pf1N1B4_582 0.73 +0.1 675,056 - Pf1N1B4_582 0.73 +0.2 675,149 + +2.3 675,150 - +0.1 675,150 - -0.8 675,166 + -1.4 675,167 - +1.9 675,167 - -0.4 675,169 + -0.8 675,215 + +1.9 675,215 + +0.9 675,215 + -0.1 675,216 - +0.9 675,216 - -0.8 675,220 - -1.6 675,441 - Pf1N1B4_583 0.24 +0.8 675,441 - Pf1N1B4_583 0.24 +0.1 675,441 - Pf1N1B4_583 0.24 -0.3 675,441 - Pf1N1B4_583 0.24 +1.9
Or see this region's nucleotide sequence