Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_526

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_525 and Pf1N1B4_526 are separated by 9 nucleotidesPf1N1B4_526 and Pf1N1B4_527 are separated by 51 nucleotides Pf1N1B4_525 - Agmatinase (EC 3.5.3.11), at 624,569 to 625,519 _525 Pf1N1B4_526 - Undecaprenyl pyrophosphate synthase, at 625,529 to 625,951 _526 Pf1N1B4_527 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 626,003 to 627,514 _527 Position (kb) 625 626Strain fitness (log2 ratio) -2 -1 0 1 2 3at 624.538 kb on + strandat 624.538 kb on + strandat 624.538 kb on + strandat 624.538 kb on + strandat 624.539 kb on - strandat 624.539 kb on - strandat 624.542 kb on + strandat 624.542 kb on + strandat 624.543 kb on - strandat 624.779 kb on + strand, within Pf1N1B4_525at 624.780 kb on - strand, within Pf1N1B4_525at 624.780 kb on - strand, within Pf1N1B4_525at 624.894 kb on - strand, within Pf1N1B4_525at 624.979 kb on + strand, within Pf1N1B4_525at 624.980 kb on - strand, within Pf1N1B4_525at 625.086 kb on + strand, within Pf1N1B4_525at 625.087 kb on - strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.145 kb on + strand, within Pf1N1B4_525at 625.146 kb on - strand, within Pf1N1B4_525at 625.274 kb on + strand, within Pf1N1B4_525at 625.274 kb on + strand, within Pf1N1B4_525at 625.434 kb on - strandat 625.479 kb on - strandat 625.604 kb on + strand, within Pf1N1B4_526at 625.605 kb on - strand, within Pf1N1B4_526at 625.605 kb on - strand, within Pf1N1B4_526at 625.643 kb on + strand, within Pf1N1B4_526at 625.644 kb on - strandat 625.644 kb on - strand, within Pf1N1B4_526at 625.679 kb on + strand, within Pf1N1B4_526at 625.679 kb on + strand, within Pf1N1B4_526at 625.893 kb on + strand, within Pf1N1B4_526at 625.893 kb on + strand, within Pf1N1B4_526at 626.009 kb on - strandat 626.032 kb on + strandat 626.033 kb on - strandat 626.456 kb on + strand, within Pf1N1B4_527at 626.456 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.495 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.600 kb on + strand, within Pf1N1B4_527at 626.601 kb on - strand, within Pf1N1B4_527at 626.601 kb on - strand, within Pf1N1B4_527at 626.717 kb on + strand, within Pf1N1B4_527at 626.717 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.861 kb on + strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527at 626.862 kb on - strand, within Pf1N1B4_527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
624,538 + -1.1
624,538 + -0.7
624,538 + +0.1
624,538 + +2.9
624,539 - +0.0
624,539 - +0.5
624,542 + +0.6
624,542 + -0.3
624,543 - +1.1
624,779 + Pf1N1B4_525 0.22 -0.1
624,780 - Pf1N1B4_525 0.22 -0.3
624,780 - Pf1N1B4_525 0.22 -0.3
624,894 - Pf1N1B4_525 0.34 -0.1
624,979 + Pf1N1B4_525 0.43 -1.1
624,980 - Pf1N1B4_525 0.43 -2.5
625,086 + Pf1N1B4_525 0.54 -1.0
625,087 - Pf1N1B4_525 0.54 +1.4
625,145 + Pf1N1B4_525 0.61 +0.2
625,145 + Pf1N1B4_525 0.61 +0.5
625,146 - Pf1N1B4_525 0.61 -0.5
625,274 + Pf1N1B4_525 0.74 -1.1
625,274 + Pf1N1B4_525 0.74 +0.5
625,434 - -0.7
625,479 - -2.3
625,604 + Pf1N1B4_526 0.18 -1.4
625,605 - Pf1N1B4_526 0.18 +0.3
625,605 - Pf1N1B4_526 0.18 -2.1
625,643 + Pf1N1B4_526 0.27 -0.7
625,644 - +0.9
625,644 - Pf1N1B4_526 0.27 -1.3
625,679 + Pf1N1B4_526 0.35 -1.5
625,679 + Pf1N1B4_526 0.35 -0.4
625,893 + Pf1N1B4_526 0.86 -0.1
625,893 + Pf1N1B4_526 0.86 -0.7
626,009 - -0.5
626,032 + -0.4
626,033 - -0.8
626,456 + Pf1N1B4_527 0.30 -0.7
626,456 + Pf1N1B4_527 0.30 +0.2
626,495 + Pf1N1B4_527 0.33 +1.9
626,495 + Pf1N1B4_527 0.33 +0.8
626,495 + Pf1N1B4_527 0.33 +0.3
626,495 + Pf1N1B4_527 0.33 -0.4
626,495 + Pf1N1B4_527 0.33 +1.2
626,600 + Pf1N1B4_527 0.39 -0.6
626,600 + Pf1N1B4_527 0.39 -1.2
626,600 + Pf1N1B4_527 0.39 -0.9
626,601 - Pf1N1B4_527 0.40 -2.4
626,601 - Pf1N1B4_527 0.40 -0.3
626,717 + Pf1N1B4_527 0.47 -0.1
626,717 + Pf1N1B4_527 0.47 -1.8
626,861 + Pf1N1B4_527 0.57 -1.1
626,861 + Pf1N1B4_527 0.57 -1.2
626,861 + Pf1N1B4_527 0.57 +0.0
626,861 + Pf1N1B4_527 0.57 -0.1
626,861 + Pf1N1B4_527 0.57 +0.2
626,861 + Pf1N1B4_527 0.57 +0.6
626,862 - Pf1N1B4_527 0.57 +0.1
626,862 - Pf1N1B4_527 0.57 +0.5
626,862 - Pf1N1B4_527 0.57 +0.1
626,862 - Pf1N1B4_527 0.57 +0.9
626,862 - Pf1N1B4_527 0.57 -0.1
626,862 - Pf1N1B4_527 0.57 +1.2
626,862 - Pf1N1B4_527 0.57 -0.8

Or see this region's nucleotide sequence