Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5066 and Pf1N1B4_5067 are separated by 105 nucleotides Pf1N1B4_5067 and Pf1N1B4_5068 overlap by 1 nucleotides Pf1N1B4_5068 and Pf1N1B4_5069 are separated by 202 nucleotides
Pf1N1B4_5066 - Transcriptional regulator, LysR family, at 5,612,042 to 5,612,935
_5066
Pf1N1B4_5067 - PUTATIVE TRANSFERASE PROTEIN( EC:2.- ), at 5,613,041 to 5,613,706
_5067
Pf1N1B4_5068 - FIG00974267: hypothetical protein, at 5,613,706 to 5,614,368
_5068
Pf1N1B4_5069 - Demethylmenaquinone methyltransferase, at 5,614,571 to 5,615,005
_5069
Position (kb) 5613
5614 Strain fitness (log2 ratio) -2
-1
0
1 at 5612.957 kb on + strand at 5612.982 kb on + strand at 5613.049 kb on + strand at 5613.521 kb on + strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5614.435 kb on - strand at 5614.692 kb on + strand, within Pf1N1B4_5069
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,612,957 + -0.0 5,612,982 + +0.7 5,613,049 + +0.8 5,613,521 + Pf1N1B4_5067 0.72 -1.4 5,613,522 - Pf1N1B4_5067 0.72 -0.6 5,613,522 - Pf1N1B4_5067 0.72 -2.0 5,613,522 - Pf1N1B4_5067 0.72 -1.0 5,613,522 - Pf1N1B4_5067 0.72 +0.2 5,613,522 - Pf1N1B4_5067 0.72 +1.0 5,613,522 - Pf1N1B4_5067 0.72 -0.9 5,614,435 - -0.6 5,614,692 + Pf1N1B4_5069 0.28 +1.1
Or see this region's nucleotide sequence