Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4857

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4856 and Pf1N1B4_4857 overlap by 1 nucleotidesPf1N1B4_4857 and Pf1N1B4_4858 are separated by 76 nucleotides Pf1N1B4_4856 - Signal transduction histidine kinase, at 5,367,371 to 5,370,862 _4856 Pf1N1B4_4857 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 5,370,862 to 5,371,677 _4857 Pf1N1B4_4858 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 5,371,754 to 5,372,968 _4858 Position (kb) 5370 5371 5372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5369.865 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.009 kb on + strand, within Pf1N1B4_4856at 5370.010 kb on - strand, within Pf1N1B4_4856at 5370.010 kb on - strand, within Pf1N1B4_4856at 5370.235 kb on + strand, within Pf1N1B4_4856at 5370.256 kb on + strand, within Pf1N1B4_4856at 5370.284 kb on + strand, within Pf1N1B4_4856at 5370.284 kb on + strand, within Pf1N1B4_4856at 5370.284 kb on + strand, within Pf1N1B4_4856at 5370.295 kb on + strand, within Pf1N1B4_4856at 5370.295 kb on + strand, within Pf1N1B4_4856at 5370.332 kb on + strand, within Pf1N1B4_4856at 5370.332 kb on + strand, within Pf1N1B4_4856at 5370.487 kb on + strand, within Pf1N1B4_4856at 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.513 kb on + strandat 5370.514 kb on - strandat 5370.785 kb on + strandat 5370.860 kb on + strandat 5370.910 kb on + strandat 5370.919 kb on + strandat 5370.919 kb on + strandat 5370.925 kb on + strandat 5370.940 kb on + strandat 5371.118 kb on + strand, within Pf1N1B4_4857at 5371.118 kb on + strand, within Pf1N1B4_4857at 5371.150 kb on + strand, within Pf1N1B4_4857at 5371.150 kb on + strand, within Pf1N1B4_4857at 5371.150 kb on + strand, within Pf1N1B4_4857at 5371.201 kb on + strand, within Pf1N1B4_4857at 5371.342 kb on + strand, within Pf1N1B4_4857at 5371.342 kb on + strand, within Pf1N1B4_4857at 5371.343 kb on - strand, within Pf1N1B4_4857at 5371.378 kb on + strandat 5371.378 kb on + strandat 5371.381 kb on + strand, within Pf1N1B4_4857at 5371.381 kb on + strand, within Pf1N1B4_4857at 5371.381 kb on + strand, within Pf1N1B4_4857at 5371.393 kb on + strand, within Pf1N1B4_4857at 5371.621 kb on + strandat 5371.663 kb on + strandat 5371.663 kb on + strandat 5371.663 kb on + strandat 5371.663 kb on + strandat 5371.663 kb on + strandat 5371.679 kb on + strandat 5371.758 kb on + strandat 5371.762 kb on + strandat 5371.779 kb on + strandat 5371.853 kb on + strandat 5372.032 kb on + strand, within Pf1N1B4_4858at 5372.036 kb on + strandat 5372.052 kb on - strand, within Pf1N1B4_4858at 5372.335 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strand, within Pf1N1B4_4858at 5372.511 kb on + strandat 5372.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,369,865 + Pf1N1B4_4856 0.71 +0.8
5,370,009 + Pf1N1B4_4856 0.76 -1.0
5,370,009 + Pf1N1B4_4856 0.76 -2.6
5,370,009 + Pf1N1B4_4856 0.76 -0.8
5,370,009 + Pf1N1B4_4856 0.76 -0.6
5,370,009 + Pf1N1B4_4856 0.76 -0.6
5,370,009 + Pf1N1B4_4856 0.76 -2.2
5,370,010 - Pf1N1B4_4856 0.76 -2.8
5,370,010 - Pf1N1B4_4856 0.76 -0.1
5,370,235 + Pf1N1B4_4856 0.82 -0.8
5,370,256 + Pf1N1B4_4856 0.83 -0.4
5,370,284 + Pf1N1B4_4856 0.83 +0.1
5,370,284 + Pf1N1B4_4856 0.83 +0.7
5,370,284 + Pf1N1B4_4856 0.83 -1.6
5,370,295 + Pf1N1B4_4856 0.84 -0.4
5,370,295 + Pf1N1B4_4856 0.84 -0.8
5,370,332 + Pf1N1B4_4856 0.85 +0.4
5,370,332 + Pf1N1B4_4856 0.85 +0.7
5,370,487 + Pf1N1B4_4856 0.89 -1.4
5,370,513 + -1.2
5,370,513 + -1.8
5,370,513 + +0.7
5,370,513 + +0.4
5,370,513 + -0.6
5,370,513 + -0.7
5,370,513 + -0.9
5,370,513 + -2.1
5,370,514 - -0.7
5,370,785 + -0.7
5,370,860 + -0.8
5,370,910 + +0.4
5,370,919 + -0.8
5,370,919 + -0.6
5,370,925 + +1.6
5,370,940 + -1.2
5,371,118 + Pf1N1B4_4857 0.31 -0.6
5,371,118 + Pf1N1B4_4857 0.31 +0.4
5,371,150 + Pf1N1B4_4857 0.35 -1.0
5,371,150 + Pf1N1B4_4857 0.35 -0.9
5,371,150 + Pf1N1B4_4857 0.35 -2.2
5,371,201 + Pf1N1B4_4857 0.42 -1.0
5,371,342 + Pf1N1B4_4857 0.59 -0.0
5,371,342 + Pf1N1B4_4857 0.59 -1.8
5,371,343 - Pf1N1B4_4857 0.59 -1.3
5,371,378 + +0.4
5,371,378 + -0.2
5,371,381 + Pf1N1B4_4857 0.64 -0.0
5,371,381 + Pf1N1B4_4857 0.64 +0.4
5,371,381 + Pf1N1B4_4857 0.64 -0.6
5,371,393 + Pf1N1B4_4857 0.65 -1.3
5,371,621 + -1.6
5,371,663 + +0.2
5,371,663 + -0.6
5,371,663 + -1.2
5,371,663 + +1.1
5,371,663 + -0.5
5,371,679 + +0.4
5,371,758 + +0.8
5,371,762 + +2.4
5,371,779 + +1.0
5,371,853 + +1.0
5,372,032 + Pf1N1B4_4858 0.23 -1.5
5,372,036 + +0.4
5,372,052 - Pf1N1B4_4858 0.25 -0.6
5,372,335 + Pf1N1B4_4858 0.48 -1.4
5,372,511 + Pf1N1B4_4858 0.62 -0.5
5,372,511 + Pf1N1B4_4858 0.62 -1.4
5,372,511 + Pf1N1B4_4858 0.62 +0.0
5,372,511 + Pf1N1B4_4858 0.62 -1.4
5,372,511 + Pf1N1B4_4858 0.62 +1.4
5,372,511 + Pf1N1B4_4858 0.62 -0.8
5,372,511 + Pf1N1B4_4858 0.62 +0.8
5,372,511 + +0.4
5,372,512 - -0.6

Or see this region's nucleotide sequence