Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_471 and Pf1N1B4_472 overlap by 4 nucleotides Pf1N1B4_472 and Pf1N1B4_473 are separated by 96 nucleotides Pf1N1B4_473 and Pf1N1B4_474 are separated by 136 nucleotides
Pf1N1B4_471 - Biopolymer transport protein ExbD/TolR, at 561,929 to 562,357
_471
Pf1N1B4_472 - MotA/TolQ/ExbB proton channel family protein, at 562,354 to 562,989
_472
Pf1N1B4_473 - DNA internalization-related competence protein ComEC/Rec2, at 563,086 to 565,320
_473
Pf1N1B4_474 - FIG00954461: hypothetical protein, at 565,457 to 565,972
_474
Position (kb)
563
564
565
566 Strain fitness (log2 ratio)
-2
-1
0
1 at 562.363 kb on - strand at 563.022 kb on - strand at 563.022 kb on - strand at 563.022 kb on - strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.606 kb on - strand, within Pf1N1B4_473 at 563.775 kb on - strand, within Pf1N1B4_473 at 564.010 kb on + strand, within Pf1N1B4_473 at 564.011 kb on - strand, within Pf1N1B4_473 at 564.092 kb on + strand, within Pf1N1B4_473 at 564.092 kb on + strand, within Pf1N1B4_473 at 564.093 kb on - strand, within Pf1N1B4_473 at 564.093 kb on - strand, within Pf1N1B4_473 at 564.434 kb on - strand, within Pf1N1B4_473 at 564.608 kb on + strand, within Pf1N1B4_473 at 564.608 kb on + strand at 564.609 kb on - strand, within Pf1N1B4_473 at 564.609 kb on - strand, within Pf1N1B4_473 at 564.881 kb on + strand, within Pf1N1B4_473 at 564.882 kb on - strand, within Pf1N1B4_473 at 565.174 kb on + strand at 565.174 kb on + strand at 565.175 kb on - strand at 565.175 kb on - strand at 565.175 kb on - strand at 565.258 kb on + strand at 565.262 kb on - strand at 565.262 kb on - strand at 565.320 kb on + strand at 565.320 kb on + strand at 565.321 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.372 kb on - strand at 565.379 kb on + strand at 565.414 kb on - strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.427 kb on - strand at 565.427 kb on - strand at 565.427 kb on - strand at 565.456 kb on + strand at 565.481 kb on + strand at 565.481 kb on + strand at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.749 kb on - strand, within Pf1N1B4_474 at 565.898 kb on + strand, within Pf1N1B4_474 at 565.898 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.955 kb on - strand at 566.009 kb on + strand at 566.009 kb on + strand at 566.024 kb on + strand at 566.024 kb on + strand at 566.025 kb on - strand at 566.025 kb on - strand at 566.025 kb on - strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.065 kb on + strand at 566.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 562,363 - -1.2 563,022 - -1.1 563,022 - +0.9 563,022 - +0.3 563,026 + +0.6 563,026 + -0.6 563,026 + +0.9 563,026 + +0.2 563,027 - -1.4 563,027 - -2.6 563,027 - -1.9 563,027 - -0.1 563,606 - Pf1N1B4_473 0.23 +0.5 563,775 - Pf1N1B4_473 0.31 -2.6 564,010 + Pf1N1B4_473 0.41 +1.3 564,011 - Pf1N1B4_473 0.41 -0.7 564,092 + Pf1N1B4_473 0.45 +0.5 564,092 + Pf1N1B4_473 0.45 -0.3 564,093 - Pf1N1B4_473 0.45 +1.2 564,093 - Pf1N1B4_473 0.45 +0.3 564,434 - Pf1N1B4_473 0.60 -0.4 564,608 + Pf1N1B4_473 0.68 -1.4 564,608 + +0.3 564,609 - Pf1N1B4_473 0.68 +0.9 564,609 - Pf1N1B4_473 0.68 -0.1 564,881 + Pf1N1B4_473 0.80 -0.4 564,882 - Pf1N1B4_473 0.80 +1.2 565,174 + -0.1 565,174 + +0.1 565,175 - -0.3 565,175 - +0.6 565,175 - -1.9 565,258 + -0.9 565,262 - -0.4 565,262 - -0.7 565,320 + -1.1 565,320 + -0.4 565,321 + +0.6 565,371 + -0.7 565,371 + -0.2 565,371 + -1.1 565,371 + +0.3 565,371 + +1.5 565,371 + +0.2 565,371 + +1.0 565,372 - +0.9 565,379 + +0.9 565,414 - +1.5 565,426 + +0.1 565,426 + -0.1 565,426 + -0.7 565,426 + +0.7 565,426 + -0.1 565,426 + -1.1 565,426 + +1.1 565,426 + +0.5 565,426 + -0.9 565,426 + +0.3 565,426 + +1.1 565,426 + +0.0 565,427 - +0.6 565,427 - +1.5 565,427 - -0.1 565,456 + -1.1 565,481 + -1.1 565,481 + +0.2 565,745 - Pf1N1B4_474 0.56 -0.1 565,745 - Pf1N1B4_474 0.56 +0.7 565,745 - Pf1N1B4_474 0.56 +1.3 565,745 - Pf1N1B4_474 0.56 -0.3 565,745 - Pf1N1B4_474 0.56 -0.4 565,749 - Pf1N1B4_474 0.57 +1.1 565,898 + Pf1N1B4_474 0.85 -0.1 565,898 + Pf1N1B4_474 0.85 +1.2 565,916 + Pf1N1B4_474 0.89 -0.7 565,916 + Pf1N1B4_474 0.89 -1.1 565,916 + Pf1N1B4_474 0.89 +1.5 565,916 + Pf1N1B4_474 0.89 -0.1 565,916 + Pf1N1B4_474 0.89 -0.4 565,917 - Pf1N1B4_474 0.89 -0.5 565,917 - Pf1N1B4_474 0.89 +0.7 565,917 - Pf1N1B4_474 0.89 -0.1 565,917 - Pf1N1B4_474 0.89 -0.4 565,955 - -1.1 566,009 + +1.3 566,009 + +1.3 566,024 + -1.4 566,024 + -0.7 566,025 - +0.2 566,025 - -0.7 566,025 - -0.1 566,061 + -1.1 566,061 + +1.5 566,061 + -1.6 566,061 + +1.3 566,061 + +0.5 566,061 + -0.6 566,061 + +0.2 566,061 + -1.1 566,061 + +0.3 566,061 + -0.8 566,061 + +0.9 566,061 + -0.1 566,061 + -1.1 566,061 + -1.3 566,061 + -0.1 566,061 + +0.2 566,061 + -0.1 566,062 - -0.9 566,062 - -1.4 566,062 - -0.7 566,062 - -2.1 566,062 - -1.3 566,062 - -1.9 566,062 - -1.7 566,062 - +0.3 566,062 - -1.4 566,062 - -0.7 566,062 - -1.4 566,062 - -1.7 566,065 + +0.9 566,065 + -0.7
Or see this region's nucleotide sequence